MD14G1118200.v1.1

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0002044
Physical Location & Seq
Reverse (-)
19292648 .. 19298341
5694 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1118200.v1.1.491

Sequence Viewer

Length: 4542 bp
ATGGGGGAGGGTTTCTGGATCTTATTCTGCAGCAGTTCCAACTGTTCCACTGAGTCCAGAACTGAATGCACTTCCGGCTTTTTATCCTTCATCGATCCAGATTCGTGTCTCAACAATATTTTTATCATAGCAGTTGATATCTTGCTCCTATTTATCTTGTTATGTTTCTTCATATATAGAATATCAGCAAAGAAGATTACAGCACCATCAGACTCTCACACCTTCTATTCACTGTCAATTGTCTCGGCCAGCCTTAATCCGGGTTTGGCTTTGGCCTACTTGGGGTTTGGGATATGGAAAATCGTTGACAAAGTTAATACCAGTCAGACAGTTTTACCTCTCCATGGATGGCTAGTCTTGTTCTTTCAAGGGTTCACATGGTTGCTTCTGAGTTTAACCATAACCCTAAAGAAGCCACACTTTCCACATATTATGATAACGAAAGCTTTTTCGATTCTTGCCTTCTTGCTTGCAGCTTTTGTTTGCAGTTCATCAATTTGGGAAGCTGTCGTGGATGAGGCAGTAACCGTTAATGTTGTTTTAAACATTTTATATTTCCCCGGGTCAATACTCTTGCTCTTTAGTGCATTTCAGGGAAGCAATATATTTGCAAAAGGTGATCTAGAACTGCATGATGATGCTTTCTACACACCTTTGCAAGGGGAGGAATCGGATGTCAGAGATCAAATCTGCTCAAATGACAACGTCACCCCTTTTGCAAAAGCCAGGTTATTTAGTATATTGTCATTTTGGTGGTTGAATCCATTGATGAAGAAAGGCAAGAAAAAGCTTCTTCAGAATGAAGATATTCCACAACTGCGACAAGCTGATCAAGCGCAAACGTGGTACTTAATATTTACGGAGCAGTTGATCAAAAGAAAGAAAAGAGATTCATCTGATAACCCTTCCGTTTTGTACATTATTTTCTTCTGCCAGAGGAAAGCTATTTTGGTGTCGGGGCTCTTTGCACTGATCAAGATTCTAACCCTGAGTAGTGGTCCATTGTTTCTTATGGCCTTCATTAATGTTGTTGAAGGTAATGCAGCTTTTAAATATGAGGGTTATGTGCTAACTCTAGGTCTCTTCATCGTGAAAATCTTGGAGTCACTGTCGGAGAGGCAATGGCACTTTAGAACTAGATTGATTGGGCTCCAAGTAAGATCAGTGGTTACTGCAGCAATATATCGGAAGCAACTACGACTCTCAAATTCGGCCAAGATGACTTACTCTCCTGGTGAGATAGTGAATTATGTAACGGTGGATGCTTACAAAATTGGCGATTTTCCATTCTGGTTTCATCAGTTATGGTCCACAAGCCTTCAGCTGTGTCTTTCATTACTTATTGTTTACTTTTCTGTCGGGCTGGCAACCGTTGCAGCTCTAACTGTACTTATATTGACTGTGGTGGCAAGCTGTCCCTTAACGAAGTTGCAGCACAAGTACCAAAAAAAGCTCATGGCAGCACAAAATAGGAGGCTCAAGGCTATTACCGAAGCACTTACGAATATGAAGATCTTGAAGCTGTATTCTTGGGAGACAAATTTCAAGAAGGTTATTGAAGGGTTAAGAACAGAAGAAATGAAATGGTTAACTCAAGTATTGAGACAAAAGGGGTATTATACAGTTTTGTTTTGGTCATCTCCTATTTTGGTCGCTGCAGTTACTTTCTGGACATGCTACTTCCTTGGATTTACACTCTCATCTGTTAATGTTTTTACTTTTCTAGCAACGATGCGTATTGTTCAGGAGCCCATTAGGGTGATCCCAGATGTTTTTGGAGCATTTATTGAAGCAAAAATTTCATTATCTCGGATTGTGAAGTTTCTTGATGAACCGGAGTTGGAGAACAGACATACAAGGAAATACAGCAATGGAAGAGTGGTTGAGCATTCCATTTACATTATATCCTCCGAAATTTCATGGGATAGGTCTAGTTATACAAGGCCTACATTAAGGAACATAAATTTGGTGGTTGAACCCGGAGACAAAGTAGCAATTTGTGGAGAGGTTGGCTCCGGTAAATCAACCATTTTAGCTGCAATTCTTGGAGAAGTTCCACGCATCAATGGCACTGTTCAAGTATATGGGAAGATAGCATATGTTTCTCAGTCTGCATGGATCCAAACAGGAACTCTAAAAGGCTGCTCCCAAGTCTCGAACCCGAGACCTACCGCTCATGGGCGAAGGACTCTACAGGAAAATATTCTTTTTGGATCCACCATGGATCACATTAGATACCAACAAACGCTTGAGAAGTGTTCCCTAGTAAAGGATCTTGAAATGCTTTCGTTTGGTGATCTAACTCAGATAGGAGAGAGAGGTGTCAATCTAAGTGGTGGGCAGAAGCAGCGCATTCAACTTGCACGTGCACTCTATCAAAATGCTGATGTCTACCTCTTGGATGACCCTTTCAGTGCAGTTGACGCTCATACTGCGACCAGCCTATTCAATGAATATGTCATGGGAGCGCTTGCTAAGAAGACTGTTTTGCTAGTGACACACCAAGTTGACTTCCTTCCAGCATTTAATTCGATATTGTTGATGAATTCAGGGCAAATTTTAAGAGCAGCTCCTTACGAAGAGTTGCTAGCGTCTTGTCCAGAGTTCCAAGACCTCATCAATGCACACGATGACACTGCTGTTTCTGAGACGCAAGTTGAACATGCTTCTACCGGAAAACATAAATTAGCCACGGAGGAGATTGAGAAAGTTAACACTGAGTTACCTCTAAGGGAATCTTCAGGAGACCAATTGATTAAGCAAGAAGAGAGAGAAACAGGAGACACTGGTTTTAAGCCATACATCCAGTATTTGAAGCCGAGCAAGGGATTTTTGTACTTCTCTGTGTGCATCCTTCTCTACTCAATGTTCATAGTTGGGCAACTAATTCAATATTATTGGTTGGCTTCGAAACTTCAGGATTCAAGCATGTCAAGAGTAAAACTCTTCACTGTTTATTCTGTGATCATGTGTATCATGGCACTTGCTTTGTTCATTCGATCTTTCTTTATAGTCTACTTAGGATGCGGGGCATCAAGATCCATTTTTGAAACCCTATTGAACTCTCTTTTCCGAGCACCAATACTGTTTTATGACTCAACACCCGTGGGAAGGATACTTAGTCGGGTATCTACTGATATGAATATCATTGACCTTGAAGTGGCTTTCAAGTTTATCATTGCGGTTGGGGGAACTTTGAACACATATAGCATATTTTTAGTATTGGTTTTTCGTACTTGGCCAGTCGTGTTTCTGATTATTCCCACAATTTGTGTTACTATAGTCTTACAGAATTACTACTTTGCTTCGGCAAAAGAGTTGATACGAATGAATGGTACAACCAAGTCTGCCCTTGTAAGCCACCTTGCCGAATCTAATGCTGGAGCCCTGACTATCAGAGCGTTTGGAGAGGAGGATCGGTTCCTCTCAAAAACGTTGGAGCTTATTGATGCAAATGCTAGCATGGACTTCAATAGTTTTTCTGCAAATGAGTGGTTGAGAGGACGTCTTGAGTTGGTATGCGCTATTGTTCTCTCAGCCTCAGCATTTGCCATTACTTTGATTCGATTCAAGGCTTCTTCGTCTGGATTTGTTGGCATGACGCTATCCTATGGTCTCTCATTGAATGTATATGTCGTACATGCTGTCCAATATCAGTGCATGCTTGCAAATGCAATCATTTCTGTGGAAAGGGTAGAACAATACATGCATATTCCTAGTGAAGCTCCAGAAATAATAGAAGACAATCGACCTGTGCACAATTGGCCTACTGTTGGTAAAGTGGAAGTATGCGATTTAAAGGTAAGGTACAGGCCAAATGCTCCACTAGTTCTTCATGGGATAGATTGCACAATTGAAGGAGGGGACAAAATTGGGATTGTTGGCCGGACTGGAAGTGGAAAGACTACTCTTATCAGTGTTCTGTTTCGTCTGGTAGAGCCTACAGAAGGAAAGGTTTTTGTAGATGACTATGACATTTGTACAATTGGACTTCATGATTTAAGATCACGCCTCGGGATCATCCCACAAGATCCGACATTATTCAGTGGGTCTGTGAGATTCAATCTAGACCCCTTATCTAAGCATACTGATAACCAAATATGGGAGGTTCTTGACAAATGTCAGTTGCGAGAAGCCATTCAACAAAAAGAAGACGGCCTGGATTCTTTAGTTGTACAAGATGGAGCAAACTGGAGCATGGGGCAGCGACAACTGTTCTGTTTGGGACGTGCCTTGTTGAAGAGGAGCCGGATACTGGTGCTCGATGAAGCCACTGCATCAATGGACAATACAACGGACTCTATTCTGCAGAAAACTATAAGAACAGAATTTGCAGACTGCACCGTAATAACCGTGGCTCATAGGATCCCAACCGTGATGGACTGTACGAAAGTGCTTGCTATTAGTGATGGGAGACTGGTGGAGTATGATGAGCCAACGGAGCTGATGAAGAACGAGGGCTCGCTTTTTGGGCAGCTAGTCAAGGAATATTGGTCTCGTGCTGCGAATGCCGGCATCCACTCAGAAGACAGAATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1514

Amino Acids

169.89

Weight (kDa)

7.66

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 201 2e-72 ABCC10 N-terminal domain
ABC_membrane PF00664 317 - 584 4.3e-25 ABC transporter transmembrane region
ABC_tran PF00005 651 - 804 2.3e-21 ABC transporter
ABC_membrane PF00664 947 - 1204 2.8e-24 ABC transporter transmembrane region
ABC_tran PF00005 1278 - 1426 2.9e-25 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 3508
AccBSI CCGCTC 1 cut(s) 2174
AccI GTMKAC 2 cut(s) 2391, 3015
AciI CCGC 3 cut(s) 2172, 3027, 3182
AclI AACGTT 1 cut(s) 3434
AcoI YGGCCR 4 cut(s) 246, 1212, 3239, 3883
AcsI RAATTY 8 cut(s) 1207, 1540, 1797, 1914, 1963, 2545, 2556, 4328
AcuI CTGAAG 4 cut(s) 779, 1304, 2724, 2900
AcvI CACGTG 1 cut(s) 2366
AcyI GRCGYC 1 cut(s) 3505
AfeI AGCGCT 1 cut(s) 2469
AhlI ACTAGT 1 cut(s) 3826
AjiI CACGTC 1 cut(s) 4229
AjnI CCWGG 3 cut(s) 725, 1231, 4158
AjuI GAANNNNNNNTTGG 4 cut(s) 932, 964, 1949, 1981
AloI GAACNNNNNNTCC 2 cut(s) 3404, 3436
Alw21I GWGCWC 4 cut(s) 2371, 3079, 3759, 4263
Alw44I GTGCAC 2 cut(s) 2367, 3755
Ama87I CYCGRG 3 cut(s) 560, 2161, 4013
Aor51HI AGCGCT 1 cut(s) 2469
ApaLI GTGCAC 2 cut(s) 2367, 3755
ApoI RAATTY 8 cut(s) 1207, 1540, 1797, 1914, 1963, 2545, 2556, 4328
AseI ATTAAT 1 cut(s) 1023
Asp700I GAANNNNTTC 3 cut(s) 807, 2202, 4137
AspLEI GCGC 4 cut(s) 838, 2352, 2470, 3524
AspS9I GGNCC 2 cut(s) 998, 1308
AsuC2I CCSGG 4 cut(s) 261, 561, 562, 1980
AsuHPI GGTGA 5 cut(s) 629, 700, 1247, 1771, 2306
AsuII TTCGAA 1 cut(s) 2909
AsuNHI GCTAGC 2 cut(s) 2587, 3458
AvaI CYCGRG 3 cut(s) 560, 2161, 4013
AvaII GGWCC 2 cut(s) 998, 1308
BaeGI GKGCMC 2 cut(s) 2371, 3759
BalI TGGCCA 1 cut(s) 3241
BamHI GGATCC 3 cut(s) 2118, 2213, 4365
BanII GRGCYC 5 cut(s) 963, 1152, 1752, 3388, 4463
BauI CACGAG 1 cut(s) 4497
BbrPI CACGTG 1 cut(s) 2366
BbsI GAAGAC 4 cut(s) 2486, 3747, 4158, 4533
Bbv12I GWGCWC 4 cut(s) 2371, 3079, 3759, 4263
BbvCI CCTCAGC 1 cut(s) 3541
BccI CCATC 5 cut(s) 214, 342, 4175, 4372, 4403
BceAI ACGGC 1 cut(s) 4171
BcgI CGANNNNNNTGC 6 cut(s) 2511, 2545, 2618, 2652, 3359, 3393
BciT130I CCWGG 3 cut(s) 727, 1233, 4160
BciVI GTATCC 2 cut(s) 3108, 4245
BclI TGATCA 4 cut(s) 829, 870, 972, 2964
BcnI CCSGG 4 cut(s) 261, 561, 562, 1980
BcuI ACTAGT 1 cut(s) 3826
BfmI CTRYAG 7 cut(s) 28, 1173, 1656, 2192, 3279, 3942, 4307
BfoI RGCGCY 1 cut(s) 2471
BfuI GTATCC 2 cut(s) 3108, 4245
BglII AGATCT 1 cut(s) 1512
Bme1390I CCNGG 7 cut(s) 261, 561, 562, 727, 1233, 1980, 4160
Bme18I GGWCC 2 cut(s) 998, 1308
BmeT110I CYCGRG 3 cut(s) 560, 2161, 4013
BmgBI CACGTC 1 cut(s) 4229
BmgT120I GGNCC 2 cut(s) 998, 1308
BmiI GGNNCC 9 cut(s) 1151, 1749, 2014, 2120, 2215, 3385, 3422, 4247, 4367
BmrFI CCNGG 7 cut(s) 261, 561, 562, 727, 1233, 1980, 4160
BmtI GCTAGC 2 cut(s) 2591, 3462
BoxI GACNNNNGTC 1 cut(s) 4119
BpiI GAAGAC 4 cut(s) 2486, 3747, 4158, 4533
BplI GAGNNNNNCTC 4 cut(s) 1997, 2029, 2928, 2960
BpmI CTGGAG 3 cut(s) 3402, 3711, 4213
Bpu10I CCTNAGC 1 cut(s) 3541
Bpu14I TTCGAA 1 cut(s) 2909
BpuEI CTTGAG 4 cut(s) 1463, 1578, 2270, 3530
BpuMI CCSGG 4 cut(s) 261, 561, 562, 1980
Bsa29I ATCGAT 1 cut(s) 93
BsaAI YACGTR 1 cut(s) 2366
BsaHI GRCGYC 1 cut(s) 3505
BsaI GGTCTC 5 cut(s) 1085, 2158, 2739, 3620, 4500
BsaJI CCNNGG 9 cut(s) 343, 559, 560, 1684, 2220, 2691, 3105, 4012, 4353
BsaWI WCCGGW 3 cut(s) 1834, 2015, 2672
BsaXI ACNNNNNCTCC 8 cut(s) 1094, 1124, 1213, 1243, 1974, 2004, 3404, 3434
Bse118I RCCGGY 1 cut(s) 4511
Bse1I ACTGG 8 cut(s) 321, 2791, 2806, 3242, 3895, 4196, 4260, 4422
Bse3DI GCAATG 3 cut(s) 1127, 1876, 3177
BseBI CCWGG 3 cut(s) 727, 1233, 4160
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 9 cut(s) 343, 559, 560, 1684, 2220, 2691, 3105, 4012, 4353
BseMI GCAATG 3 cut(s) 1127, 1876, 3177
BseNI ACTGG 8 cut(s) 321, 2791, 2806, 3242, 3895, 4196, 4260, 4422
BseRI GAGGAG 3 cut(s) 2711, 3425, 4258
BseSI GKGCMC 2 cut(s) 2371, 3759
BsgI GTGCAG 2 cut(s) 2436, 4324
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 4 cut(s) 2371, 3079, 3759, 4263
BsiHKCI CYCGRG 3 cut(s) 560, 2161, 4013
BslFI GGGAC 3 cut(s) 1401, 3878, 4239
BsmBI CGTCTC 1 cut(s) 2642
BsmFI GGGAC 3 cut(s) 1401, 3878, 4239
BsmI GAATGC 4 cut(s) 71, 1888, 2352, 4513
Bso31I GGTCTC 5 cut(s) 1085, 2158, 2739, 3620, 4500
BsoBI CYCGRG 3 cut(s) 560, 2161, 4013
Bsp119I TTCGAA 1 cut(s) 2909
Bsp1286I GDGCHC 9 cut(s) 963, 1152, 1752, 2371, 3079, 3388, 3759, 4263, 4463
Bsp1407I TGTACA 3 cut(s) 915, 3980, 4174
Bsp19I CCATGG 2 cut(s) 343, 2220
BspACI CCGC 3 cut(s) 2172, 3027, 3182
BspDI ATCGAT 1 cut(s) 93
BspHI TCATGA 1 cut(s) 3994
BspLI GGNNCC 9 cut(s) 1151, 1749, 2014, 2120, 2215, 3385, 3422, 4247, 4367
BspMAI CTGCAG 4 cut(s) 32, 1177, 1660, 4311
BspOI GCTAGC 2 cut(s) 2591, 3462
BspT104I TTCGAA 1 cut(s) 2909
BspTNI GGTCTC 5 cut(s) 1085, 2158, 2739, 3620, 4500
BsrBI CCGCTC 1 cut(s) 2174
BsrDI GCAATG 3 cut(s) 1127, 1876, 3177
BsrFI RCCGGY 1 cut(s) 4511
BsrGI TGTACA 3 cut(s) 915, 3980, 4174
BsrI ACTGG 8 cut(s) 321, 2791, 2806, 3242, 3895, 4196, 4260, 4422
BssAI RCCGGY 1 cut(s) 4511
BssECI CCNNGG 9 cut(s) 343, 559, 560, 1684, 2220, 2691, 3105, 4012, 4353
BssNI GRCGYC 1 cut(s) 3505
BssSI CACGAG 1 cut(s) 4497
BssT1I CCWWGG 3 cut(s) 343, 1684, 2220
Bst2BI CACGAG 1 cut(s) 4497
Bst2UI CCWGG 3 cut(s) 727, 1233, 4160
Bst6I CTCTTC 6 cut(s) 1088, 1870, 2574, 2760, 2951, 4235
BstACI GRCGYC 1 cut(s) 3505
BstAPI GCANNNNNTGC 1 cut(s) 1373
BstAUI TGTACA 3 cut(s) 915, 3980, 4174
BstBAI YACGTR 1 cut(s) 2366
BstBI TTCGAA 1 cut(s) 2909
BstDSI CCRYGG 5 cut(s) 343, 2220, 2691, 3105, 4353
BstENI CCTNNNNNAGG 3 cut(s) 657, 2267, 3945
BstH2I RGCGCY 1 cut(s) 2471
BstHHI GCGC 4 cut(s) 838, 2352, 2470, 3524
BstNI CCWGG 3 cut(s) 727, 1233, 4160
BstNSI RCATGY 6 cut(s) 1677, 2666, 2932, 3644, 3664, 3709
BstPAI GACNNNNGTC 1 cut(s) 4119
BstSCI CCNGG 7 cut(s) 259, 559, 560, 725, 1231, 1978, 4158
BstSFI CTRYAG 7 cut(s) 28, 1173, 1656, 2192, 3279, 3942, 4307
BstSLI GKGCMC 2 cut(s) 2371, 3759
BstV2I GAAGAC 4 cut(s) 2486, 3747, 4158, 4533
BstX2I RGATCY 8 cut(s) 18, 1512, 2118, 2213, 2272, 3038, 4030, 4365
BstYI RGATCY 8 cut(s) 18, 1512, 2118, 2213, 2272, 3038, 4030, 4365
Bsu15I ATCGAT 1 cut(s) 93
BsuI GTATCC 2 cut(s) 3108, 4245
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 5 cut(s) 343, 2220, 2691, 3105, 4353
BtrI CACGTC 1 cut(s) 4229
BtsI GCAGTG 2 cut(s) 2634, 4272
CciI TCATGA 1 cut(s) 3994
CfoI GCGC 4 cut(s) 838, 2352, 2470, 3524
Cfr10I RCCGGY 1 cut(s) 4511
Cfr13I GGNCC 2 cut(s) 998, 1308
Cfr9I CCCGGG 1 cut(s) 560
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 4 cut(s) 2432, 2580, 2659, 3610
CspCI CAANNNNNGTGG 4 cut(s) 2314, 2349, 3087, 3122
DraI TTTAAA 3 cut(s) 543, 1051, 3798
EaeI YGGCCR 4 cut(s) 246, 1212, 3239, 3883
Eam1104I CTCTTC 6 cut(s) 1088, 1870, 2574, 2760, 2951, 4235
EarI CTCTTC 6 cut(s) 1088, 1870, 2574, 2760, 2951, 4235
Eco130I CCWWGG 3 cut(s) 343, 1684, 2220
Eco147I AGGCCT 1 cut(s) 1945
Eco24I GRGCYC 5 cut(s) 963, 1152, 1752, 3388, 4463
Eco31I GGTCTC 5 cut(s) 1085, 2158, 2739, 3620, 4500
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 2 cut(s) 998, 1308
Eco47III AGCGCT 1 cut(s) 2469
Eco57I CTGAAG 4 cut(s) 779, 1304, 2724, 2900
Eco72I CACGTG 1 cut(s) 2366
Eco88I CYCGRG 3 cut(s) 560, 2161, 4013
EcoNI CCTNNNNNAGG 3 cut(s) 657, 2267, 3945
EcoRI GAATTC 1 cut(s) 2545
EcoRII CCWGG 3 cut(s) 725, 1231, 4158
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 3 cut(s) 343, 1684, 2220
EcoT22I ATGCAT 1 cut(s) 3711
EcoT38I GRGCYC 5 cut(s) 963, 1152, 1752, 3388, 4463
ErhI CCWWGG 3 cut(s) 343, 1684, 2220
Esp3I CGTCTC 1 cut(s) 2642
FalI AAGNNNNNCTT 4 cut(s) 404, 436, 2722, 2754
FaqI GGGAC 3 cut(s) 1401, 3878, 4239
FauI CCCGC 1 cut(s) 3020
FauNDI CATATG 1 cut(s) 2098
FbaI TGATCA 4 cut(s) 829, 870, 972, 2964
FblI GTMKAC 2 cut(s) 2391, 3015
FriOI GRGCYC 5 cut(s) 963, 1152, 1752, 3388, 4463
GlaI GCGC 4 cut(s) 837, 2351, 2469, 3523
GsuI CTGGAG 3 cut(s) 3402, 3711, 4213
HaeII RGCGCY 1 cut(s) 2471
HgaI GACGC 4 cut(s) 2432, 2580, 2659, 3610
HhaI GCGC 4 cut(s) 838, 2352, 2470, 3524
Hin1I GRCGYC 1 cut(s) 3505
Hin6I GCGC 4 cut(s) 836, 2350, 2468, 3522
HinP1I GCGC 4 cut(s) 836, 2350, 2468, 3522
HincII GTYRAC 5 cut(s) 307, 1590, 2422, 2509, 2713
HindII GTYRAC 5 cut(s) 307, 1590, 2422, 2509, 2713
HindIII AAGCTT 2 cut(s) 444, 788
HpaI GTTAAC 2 cut(s) 1590, 2713
HphI GGTGA 5 cut(s) 629, 700, 1247, 1771, 2306
HpyCH4IV ACGT 6 cut(s) 705, 842, 2365, 3434, 3505, 4228
HpySE526I ACGT 6 cut(s) 705, 842, 2365, 3434, 3505, 4228
Hsp92I GRCGYC 1 cut(s) 3505
HspAI GCGC 4 cut(s) 836, 2350, 2468, 3522
KroI GCCGGC 1 cut(s) 4511
KroNI GCCGGC 1 cut(s) 4513
Ksp22I TGATCA 4 cut(s) 829, 870, 972, 2964
KspAI GTTAAC 2 cut(s) 1590, 2713
MaeII ACGT 6 cut(s) 705, 842, 2365, 3434, 3505, 4228
MaeIII GTNAC 9 cut(s) 523, 706, 1104, 1168, 1252, 1660, 2494, 2721, 3274
MbiI CCGCTC 1 cut(s) 2174
MfeI CAATTG 5 cut(s) 237, 2750, 3760, 3852, 3984
MflI RGATCY 8 cut(s) 18, 1512, 2118, 2213, 2272, 3038, 4030, 4365
MhlI GDGCHC 9 cut(s) 963, 1152, 1752, 2371, 3079, 3388, 3759, 4263, 4463
MlsI TGGCCA 1 cut(s) 3241
MluNI TGGCCA 1 cut(s) 3241
MlyI GAGTC 7 cut(s) 62, 206, 1112, 1194, 2182, 3089, 4292
MmeI TCCRAC 5 cut(s) 63, 1092, 1821, 3417, 4058
Mox20I TGGCCA 1 cut(s) 3241
Mph1103I ATGCAT 1 cut(s) 3711
MroNI GCCGGC 1 cut(s) 4511
MroXI GAANNNNTTC 3 cut(s) 807, 2202, 4137
MscI TGGCCA 1 cut(s) 3241
MslI CAYNNNNRTG 4 cut(s) 636, 751, 1757, 3683
Msp20I TGGCCA 1 cut(s) 3241
MspA1I CMGCKG 1 cut(s) 1324
MspR9I CCNGG 7 cut(s) 261, 561, 562, 727, 1233, 1980, 4160
MunI CAATTG 5 cut(s) 237, 2750, 3760, 3852, 3984
Mva1269I GAATGC 4 cut(s) 71, 1888, 2352, 4513
MvaI CCWGG 3 cut(s) 727, 1233, 4160
NaeI GCCGGC 1 cut(s) 4513
NciI CCSGG 4 cut(s) 261, 561, 562, 1980
NcoI CCATGG 2 cut(s) 343, 2220
NdeI CATATG 1 cut(s) 2098
NgoMIV GCCGGC 1 cut(s) 4511
NheI GCTAGC 2 cut(s) 2587, 3458
NlaIV GGNNCC 9 cut(s) 1151, 1749, 2014, 2120, 2215, 3385, 3422, 4247, 4367
NmeAIII GCCGAG 2 cut(s) 224, 2844
NmuCI GTSAC 3 cut(s) 706, 1104, 2494
NsiI ATGCAT 1 cut(s) 3711
NspI RCATGY 6 cut(s) 1677, 2666, 2932, 3644, 3664, 3709
NspV TTCGAA 1 cut(s) 2909
PaeI GCATGC 1 cut(s) 3664
PagI TCATGA 1 cut(s) 3994
PceI AGGCCT 1 cut(s) 1945
PctI GAATGC 4 cut(s) 71, 1888, 2352, 4513
PdiI GCCGGC 1 cut(s) 4513
PdmI GAANNNNTTC 3 cut(s) 807, 2202, 4137
PflFI GACNNNGTC 1 cut(s) 704
PleI GAGTC 7 cut(s) 61, 206, 1111, 1194, 2182, 3089, 4292
PmaCI CACGTG 1 cut(s) 2366
PmlI CACGTG 1 cut(s) 2366
PpsI GAGTC 7 cut(s) 61, 206, 1111, 1194, 2182, 3089, 4292
Ppu21I YACGTR 1 cut(s) 2366
PshAI GACNNNNGTC 1 cut(s) 4119
PshBI ATTAAT 1 cut(s) 1023
Psp1406I AACGTT 1 cut(s) 3434
Psp6I CCWGG 3 cut(s) 725, 1231, 4158
PspCI CACGTG 1 cut(s) 2366
PspGI CCWGG 3 cut(s) 725, 1231, 4158
PspN4I GGNNCC 9 cut(s) 1151, 1749, 2014, 2120, 2215, 3385, 3422, 4247, 4367
PspPI GGNCC 2 cut(s) 998, 1308
PstI CTGCAG 4 cut(s) 32, 1177, 1660, 4311
PsuI RGATCY 8 cut(s) 18, 1512, 2118, 2213, 2272, 3038, 4030, 4365
PsyI GACNNNGTC 1 cut(s) 704
PvuII CAGCTG 1 cut(s) 1324
RseI CAYNNNNRTG 4 cut(s) 636, 751, 1757, 3683
Sau96I GGNCC 2 cut(s) 998, 1308
SchI GAGTC 7 cut(s) 62, 206, 1112, 1194, 2182, 3089, 4292
ScrFI CCNGG 7 cut(s) 261, 561, 562, 727, 1233, 1980, 4160
SduI GDGCHC 9 cut(s) 963, 1152, 1752, 2371, 3079, 3388, 3759, 4263, 4463
SfcI CTRYAG 7 cut(s) 28, 1173, 1656, 2192, 3279, 3942, 4307
SfuI TTCGAA 1 cut(s) 2909
SinI GGWCC 2 cut(s) 998, 1308
SmaI CCCGGG 1 cut(s) 562
SmiMI CAYNNNNRTG 4 cut(s) 636, 751, 1757, 3683
SmlI CTYRAG 4 cut(s) 1478, 1593, 2249, 3509
SmoI CTYRAG 4 cut(s) 1478, 1593, 2249, 3509
SpeI ACTAGT 1 cut(s) 3826
SphI GCATGC 1 cut(s) 3664
SseBI AGGCCT 1 cut(s) 1945
SsiI CCGC 3 cut(s) 2172, 3027, 3182
SspI AATATT 5 cut(s) 118, 855, 2203, 2894, 4490
StuI AGGCCT 1 cut(s) 1945
StyD4I CCNGG 7 cut(s) 259, 559, 560, 725, 1231, 1978, 4158
StyI CCWWGG 3 cut(s) 343, 1684, 2220
TaiI ACGT 6 cut(s) 708, 845, 2368, 3437, 3508, 4231
TaqI TCGA 9 cut(s) 93, 452, 2156, 2531, 2909, 2998, 3565, 3748, 4263
TatI WGTACW 5 cut(s) 915, 1387, 2835, 3980, 4174
TseFI GTSAC 3 cut(s) 706, 1104, 2494
Tsp45I GTSAC 3 cut(s) 706, 1104, 2494
TspGWI ACGGA 5 cut(s) 875, 898, 2708, 4310, 4454
TspMI CCCGGG 1 cut(s) 560
Tth111I GACNNNGTC 1 cut(s) 704
VneI GTGCAC 2 cut(s) 2367, 3755
VpaK11BI GGWCC 2 cut(s) 998, 1308
VspI ATTAAT 1 cut(s) 1023
XagI CCTNNNNNAGG 3 cut(s) 657, 2267, 3945
XapI RAATTY 8 cut(s) 1207, 1540, 1797, 1914, 1963, 2545, 2556, 4328
XbaI TCTAGA 2 cut(s) 622, 4066
XceI RCATGY 6 cut(s) 1677, 2666, 2932, 3644, 3664, 3709
XcmI CCANNNNNNNNNTGG 1 cut(s) 4279
XmaI CCCGGG 1 cut(s) 560
XmiI GTMKAC 2 cut(s) 2391, 3015
XmnI GAANNNNTTC 3 cut(s) 807, 2202, 4137
ZraI GACGTC 1 cut(s) 3506
Zsp2I ATGCAT 1 cut(s) 3711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.