FvH4_5g03784

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002044
Physical Location & Seq
Reverse (-)
2247037 .. 2253336
6300 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03784.t1

Sequence Viewer

Length: 4437 bp
ATGGCGGAAGGTTTCTGGATCTTGTTCTGTGATTGTTCAACTGAGTCCAGAAGTGATTGCGGTTCCAACATTGCAGCTATTATCGATCCAGATTCATGTATCAACAATATTGTGGTCGTTGCGGTTGATATCTTGCTTCTATTCGTCTTGTTTTGTATCTTCATTTATAGAACATTATCAAAGAAGGTTATAGCATCATCACAGTCGTACACCTTGTCTACTGTGTCAATTGTTTCGGCCACTTTCAATGCCTGTTTGGGTTTGGCCTACTTGGGTTCTGCGATATGGAAAACGGTTGAGAAAGTAAATACAGATCAGAGTTTTTTACCTCTACATGGATGGATTGTGTTTTTCTTTCAGGGGTTTACTTGGTTGGTGCTGGGACTAACTATAAACCTGAAGAAGCCACACACTCCCCACACTGCAATATCAAAATTTCTTTCAATTTTTGGCTTTTTCGTTGCAGTTTTTCTTTGTGGTTCATCAATTTGGGAAGCTGTTCTTAATGAAGCAGTGATTGTTTTGAACATTCTTTGTTTGCCTGGATCACTTCTCTTGCTTTTTAGTGCATTTGAGGGAAGCAATGTTGCTAAAGATGATGCACAAGATGATGCTTTGGACACACCTTTACTGAGTACAGAATCGGATATTGCTGGTAATATCACATCAAATGAAAACGTTACTCCGTTTGCTAAAGCTGGTTTGTTTAGTGTAATGTCATTTTGGTGGTTGAATCCATTAATGAAAAAAGGAAGGGGAAAGATTCTTGAGAATGAAGATATCCCACATCTGCGACAAGCTGATCAAGCACGAACATTGTATTTGATGTTTAGGGAGCAAATGCACAAAAGGAAGGAAAGCGGTTCATGTGATGATGACCCTTCTATTTTGTCCACAATTTTTTTCTGCCAGAGGAAACCTATAATAATTTCTGGTATATTTGCGCTCATCAAGGTTCTCACACTTACCAGCGGTCCTCTATTTCTGATGGCCTTCATTAGTGTCGTTGAAGGAGAAACAGCTTTTGAAGGTGAAGGTTATGCACTGACAGCTGGTCTGTTTGTGGTTAAAGTTCTGGAGTCATTGTCGGAGAGGCAATGGTTCTTCAGAACTAGACTTATTGGTCTCCAGGTAAGATCATTGATATCAGCAGCAATATATCAGAAGCAACTAAGACTCTCAACTGCTGCCAAGATGAGTCATTCTCCTGGTGAGATAGTGAATTATGTGAGCGTGGATGCTTACAAAGTCGGTGACTTTCCATATTGGTTTCATCAGATATGGTCTACAAGCCTTCAGCTGTGTCTGTCTTTGATTATTGTTTACTTCTCTGTTGGAATAGCAACTCTTGCAGCTCTAATTACACTCATATTGATTGCGCTGGCAAGCTCTCCATTGGTCCAGATGCAGCATCTGCATCAAACAAGGTTCATGGCAGCTCAAAATAAGAGGCTGAAGGCCATAGCCGAAGCACTTTCAAATATGAAGATCTTGAAGCTGTATTCTTGGGAGACAAATTTCAAGAAAGTCATAGAAGGTTTAAGAGCAGAAGAATTCAAATGGATAAATAAAGTTCTGTTACGAAGGGGGTATTTTATCACTTTGTTCTGGTCATCTCCTATTTTGGTATCAGCCGTTACCTTTTGGACATGCTACTTCCTGGGATTTACACTCACTGCTAGTAATGTTTTCACATTTCTAGCAACTTTGCGTATAGTTCAGGAGCCAATTAGGCTCCTCCCTGATATTTTTGGATCATTTATTGAAGCGAGGGTTTCATTCTCGCGCATTGTTAAGTTCCTTGATGCACAAGAATTGGAAAACAAGGATACAAGGAAAGAGAGTACTGGAATAGAGGCTGAGCATTCCATTTTCATTAGAGCCTCTGAAATTTCATGGGACACTGGTGCAACTAAGGCCACATTAAGGAACCTGAATTTGGTGGTTGAACCTGGAGAAAAAGTAGCTCTTTGTGGAGAGGTTGGCTCCGGTAAATCAACCCTTTTAGCTGCAATTCTAGGAGAAGTTCCGCTGATCAATGGCATTGTTCAAGTGCATGGGAAAATAGCATATGTTTCTCAATCAGCATGGATTCAAACAGGAAGTATACAAGAAAATATTCTGTTTGGATCCACCATGGATCGTGTCAGGTACCAAGAGACGCTTAATAAGTGTTCGTTAGTGAAGGATCTAGAGGTCCTTCCATTTGGAGATCTCACTCAAATAGGAGAAAGAGGTGTAAATCTAAGTGGTGGACAAAAGCAGCGCATTCAACTTGCGCGTGCCCTCTATCAAAATGCTGATATCTATCTCTTGGATGACCCTTTCAGTGCAGTTGATGCTCATACTGCAAGCAGCCTATTCAATGATTATGTCATGGGAGCTCTGGCAAAGAAGACAGTGTTGCTTGTAACACATCAGGTCGACTTCCTTCCAGGATTTAGTTCTATTTTGTTGATGTCTTCAGGGAAAATTATAAGAGCAGCGCCTTATGAAGAGTTACTAGCCTCTTGTCAAGAGTTCCAAGACCTTGTCAATGCACATAATGACACTGCTGGTTCTGAGTGGCAAGTTGAATATGCTGCTACTAGCAAACATAAATTGCTTACTGAGGAGATTGAAAAGGTTGACACTCAGGCACAGTTGGAGGAATCTTCAGGAGATCAATTGATTAAACAAGAAGAGAAAGAAATAGGAGACATTGGTTTCAAGCCATACATTCAGTATTTGAAGCATAGCAAGGGATTCTTTGACTTCTCCTCATCAATCGTTTTCCACGTGATATTCATACTGGGGCAGTTAATACAGGCTTATTGGTTGGCTTCGAATCTTCAGAATTATAAGGTGTCAAGAGTTGAACTCTACGGAGTTTATTCGGGGATCATGTGTTTCATGTCATTCTGTCTGCTTCTTCGCTGTTTTAAGGTAGTCCATTTAGGATGTGGAGCATCAAGATCCATTTTCTGTACACTATTGAACTCCCTTTTTCGAGCACCAATGCTGTTTTATGATTCAACACCTTTGGGGAGGATACTCAGTCGAGTATCACTAGATATGAATATCATCGACCTTGAAGTAGCTTTGAAGCTATCAGTAGCTGTTGGGACAACTATGAACGCCTATAGCATCTTACTAGTAATGATTTATCTTACTTGGCCACTCGTGTTTCTGATTATACCGACACTTTATGCTACCTACCGCTTTCAGAGATACTACTATGCGTCTGCAAAGGAGTTGATGCGAATGAATGGCACGACTAAGTCTGCACTTGCAAGCCATATTTCTGAATCTATTGCTGGAGCAGTGACAATCAGAGCTTTTGGAGAGGAGGAAAGATTTTTCTCCAAAAACTTGGAACTCATTGATGCAAATTCTAGTGCTGACTTTAATAGTTTTTCAACAAATGAATGGTTGATTGGACGTCTAGAACTGCTTTGCGCCATTGTTCTCTCAGCCTCGACACTTGCCATTACTTTGACTCAATTTGGTGCTTCTTCCTCTGGATTTGTTGGGATGACACTATCATATGGCCTTTCATTAAATGTATTCCTAGTAATTTCAGTCCAGTTTCAGTGCATGCTAGAAAATTCAATCATTTCTGTAGAAAGGGTAGAACAATACATGCACATTCCCAGTGAAGCTCCAGAAGTAATAGAGGAAAACCGACCTCCACACAATTGGCCTATTATTGGCAAAGTGGAAATATATGACTTAAAGGTAAGATATAGGCCAAATGCTCCTTTGGTTCTCCATGGGATAAATTGCTTCATTGAGGGAGGCGACAAAATTGGAATAGTTGGCCGGACTGGAAGTGGAAAGACAACTCTTATCAGTGTTTTGTTTCGTTTGGTAGAGCCTGCAGAGGGCAAGATCATTGTAGATGGCTATGACATTTGTACAATTGGCCTTCATGATTTGAGATCACGTCTTGGGATCATACCTCAAGATCCAACATTATTCAGTGGATCTGTCAGATTCAATCTTGACCCCTTATCAGAGCATACCGATGATGAATTATGGGAGGTTCTTGAGAAATGTCAGTTAGGAGTGGCCATCAGAGATAAAGAAGAGGGCCTGGATTCTTTAGTTGTGGAAGATGGAACAAACTGGAGCATGGGACAGCGGCAGCTGTTCTGCTTGGGGCGCGCTTTATTGAAGAGGAGCCGAATACTAGTGCTGGATGAAGCTACTGCATCGATGGACAACGCAACAGATTCTATTCTGCAGAAAACTATAAGAGCAGAATTTGCAGACTGCACTGTAATAACAGTGGCACATAGGATACCAACCGTGATGGACTGCACTAAGGTGCTTGCTCTTAGCGACGGCAAAGTAGTAGAGTATGATGAGCCAATTAAGCTGATGAACAATGAGGGATCACTATTCGGGAAGCTTGTGAAGGAATATTGGTCTCGTTCTGCCAATGCTAGCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1479

Amino Acids

164.62

Weight (kDa)

5.79

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 195 3e-62 ABCC10 N-terminal domain
ABC_membrane PF00664 308 - 576 1.8e-24 ABC transporter transmembrane region
ABC_tran PF00005 642 - 776 2.5e-22 ABC transporter
ABC_membrane PF00664 922 - 1176 4.6e-28 ABC transporter transmembrane region
ABC_tran PF00005 1250 - 1398 2.5e-24 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2477, 2841
AasI GACNNNNNNGTC 1 cut(s) 1122
AatII GACGTC 1 cut(s) 3424
Acc65I GGTACC 1 cut(s) 2151
AccB1I GGYRCC 1 cut(s) 2151
AccI GTMKAC 4 cut(s) 218, 1286, 2107, 2424
AccII CGCG 3 cut(s) 1786, 2281, 4146
AciI CCGC 8 cut(s) 5, 60, 122, 861, 972, 2030, 3199, 4123
AclI AACGTT 1 cut(s) 678
AcoI YGGCCR 4 cut(s) 237, 3155, 3799, 4050
AcsI RAATTY 8 cut(s) 434, 1516, 1553, 1890, 1936, 3370, 3586, 4244
AcuI CTGAAG 7 cut(s) 419, 1090, 1280, 1475, 2448, 2640, 2816
AcvI CACGTG 1 cut(s) 2779
AcyI GRCGYC 1 cut(s) 3421
AfaI GTAC 6 cut(s) 209, 637, 1846, 2153, 2968, 3898
AfiI CCNNNNNNNGG 5 cut(s) 335, 1926, 1939, 3689, 3863
AhdI GACNNNNNGTC 1 cut(s) 1053
AhlI ACTAGT 2 cut(s) 3133, 4171
AjiI CACGTC 1 cut(s) 3926
AjnI CCWGG 7 cut(s) 541, 1128, 1207, 1659, 1951, 2434, 4074
AjuI GAANNNNNNNTTGG 4 cut(s) 1922, 1954, 3399, 3431
AleI CACNNNNGTG 1 cut(s) 4307
Alw21I GWGCWC 2 cut(s) 2386, 2995
Alw26I GTCTC 5 cut(s) 1130, 1505, 2153, 2691, 4416
AlwNI CAGNNNCTG 2 cut(s) 1414, 3098
ApoI RAATTY 8 cut(s) 434, 1516, 1553, 1890, 1936, 3370, 3586, 4244
AseI ATTAAT 1 cut(s) 740
Asp700I GAANNNNTTC 2 cut(s) 498, 2118
Asp718I GGTACC 1 cut(s) 2151
AspLEI GCGC 9 cut(s) 946, 1381, 1788, 2268, 2281, 2488, 3440, 4146, 4148
AspS9I GGNCC 4 cut(s) 974, 1399, 2197, 4072
AsuHPI GGTGA 3 cut(s) 1043, 1223, 1265
AsuII TTCGAA 1 cut(s) 2825
AsuNHI GCTAGC 1 cut(s) 4427
AvaII GGWCC 3 cut(s) 974, 1399, 2197
BaeGI GKGCMC 1 cut(s) 2287
BalI TGGCCA 2 cut(s) 3157, 4052
BamHI GGATCC 1 cut(s) 2129
BanI GGYRCC 1 cut(s) 2151
BanII GRGCYC 1 cut(s) 2386
BauI CACGAG 1 cut(s) 3161
BbrPI CACGTG 1 cut(s) 2779
BbsI GAAGAC 2 cut(s) 2402, 2454
Bbv12I GWGCWC 2 cut(s) 2386, 2995
BccI CCATC 7 cut(s) 333, 982, 3875, 4061, 4091, 4192, 4288
BceAI ACGGC 2 cut(s) 1619, 4342
BciT130I CCWGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
BciVI GTATCC 3 cut(s) 1822, 3024, 4275
BclI TGATCA 2 cut(s) 802, 2034
BcoDI GTCTC 5 cut(s) 1130, 1505, 2153, 2691, 4416
BcuI ACTAGT 2 cut(s) 3133, 4171
BfmI CTRYAG 4 cut(s) 3121, 3600, 3858, 4223
BfoI RGCGCY 1 cut(s) 2489
BfuI GTATCC 3 cut(s) 1822, 3024, 4275
BglI GCCNNNNNGGC 1 cut(s) 1732
BglII AGATCT 2 cut(s) 1488, 2212
BlpI GCTNAGC 1 cut(s) 1860
BmcAI AGTACT 1 cut(s) 1846
Bme1390I CCNGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
Bme18I GGWCC 3 cut(s) 974, 1399, 2197
BmeRI GACNNNNNGTC 1 cut(s) 1053
BmgBI CACGTC 1 cut(s) 3926
BmgT120I GGNCC 4 cut(s) 974, 1399, 2197, 4072
BmiI GGNNCC 8 cut(s) 64, 1725, 1736, 1931, 1987, 2131, 2153, 4163
BmrFI CCNGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
BmrI ACTGGG 2 cut(s) 2801, 3627
BmtI GCTAGC 1 cut(s) 4431
BmuI ACTGGG 2 cut(s) 2801, 3627
BpiI GAAGAC 2 cut(s) 2402, 2454
BplI GAGNNNNNCTC 6 cut(s) 1189, 1221, 1970, 2002, 2844, 2876
BpmI CTGGAG 6 cut(s) 1097, 1112, 1974, 3318, 3627, 4129
Bpu1102I GCTNAGC 1 cut(s) 1860
Bpu14I TTCGAA 1 cut(s) 2825
BpuEI CTTGAG 3 cut(s) 788, 3927, 4049
Bsa29I ATCGAT 2 cut(s) 84, 4196
BsaAI YACGTR 1 cut(s) 2779
BsaBI GATNNNNATC 1 cut(s) 2307
BsaHI GRCGYC 1 cut(s) 3421
BsaI GGTCTC 2 cut(s) 1130, 4416
BsaJI CCNNGG 3 cut(s) 1660, 2136, 3751
BsaWI WCCGGW 1 cut(s) 1988
BsaXI ACNNNNNCTCC 4 cut(s) 1070, 1100, 1947, 1977
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 1926, 1939, 3689, 3863
Bse1I ACTGG 8 cut(s) 1852, 1909, 2796, 3565, 3633, 3811, 4112, 4432
Bse3DI GCAATG 3 cut(s) 69, 589, 1103
Bse8I GATNNNNATC 1 cut(s) 2307
BseBI CCWGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
BseCI ATCGAT 2 cut(s) 84, 4196
BseDI CCNNGG 3 cut(s) 1660, 2136, 3751
BseGI GGATG 6 cut(s) 344, 1243, 2323, 2945, 3519, 4186
BseJI GATNNNNATC 1 cut(s) 2307
BseLI CCNNNNNNNGG 5 cut(s) 335, 1926, 1939, 3689, 3863
BseMI GCAATG 3 cut(s) 69, 589, 1103
BseMII CTCAG 8 cut(s) 33, 623, 1851, 2553, 2601, 2648, 3049, 3465
BseNI ACTGG 8 cut(s) 1852, 1909, 2796, 3565, 3633, 3811, 4112, 4432
BsePI GCGCGC 1 cut(s) 4144
BseRI GAGGAG 5 cut(s) 1727, 2627, 2749, 3341, 4174
BseSI GKGCMC 1 cut(s) 2287
BseYI CCCAGC 1 cut(s) 379
BsgI GTGCAG 4 cut(s) 2352, 3249, 4240, 4285
Bsh1236I CGCG 3 cut(s) 1786, 2281, 4146
BshNI GGYRCC 1 cut(s) 2151
BshVI ATCGAT 2 cut(s) 84, 4196
BsiHKAI GWGCWC 2 cut(s) 2386, 2995
BsiSI CCGG 2 cut(s) 1989, 3802
BslFI GGGAC 4 cut(s) 396, 1913, 3118, 4131
BslI CCNNNNNNNGG 5 cut(s) 335, 1926, 1939, 3689, 3863
BsmAI GTCTC 5 cut(s) 1130, 1505, 2153, 2691, 4416
BsmBI CGTCTC 1 cut(s) 2153
BsmFI GGGAC 4 cut(s) 396, 1913, 3118, 4131
BsmI GAATGC 2 cut(s) 1864, 2268
Bso31I GGTCTC 2 cut(s) 1130, 4416
Bsp119I TTCGAA 1 cut(s) 2825
Bsp1286I GDGCHC 3 cut(s) 2287, 2386, 2995
Bsp1407I TGTACA 2 cut(s) 2966, 3896
Bsp1720I GCTNAGC 1 cut(s) 1860
Bsp19I CCATGG 2 cut(s) 2136, 3751
BspACI CCGC 8 cut(s) 5, 60, 122, 861, 972, 2030, 3199, 4123
BspCNI CTCAG 8 cut(s) 34, 624, 1852, 2554, 2602, 2647, 3048, 3464
BspDI ATCGAT 2 cut(s) 84, 4196
BspFNI CGCG 3 cut(s) 1786, 2281, 4146
BspHI TCATGA 1 cut(s) 3910
BspLI GGNNCC 8 cut(s) 64, 1725, 1736, 1931, 1987, 2131, 2153, 4163
BspMAI CTGCAG 2 cut(s) 3862, 4227
BspOI GCTAGC 1 cut(s) 4431
BspT104I TTCGAA 1 cut(s) 2825
BspT107I GGYRCC 1 cut(s) 2151
BspTNI GGTCTC 2 cut(s) 1130, 4416
BsrDI GCAATG 3 cut(s) 69, 589, 1103
BsrGI TGTACA 2 cut(s) 2966, 3896
BsrI ACTGG 8 cut(s) 1852, 1909, 2796, 3565, 3633, 3811, 4112, 4432
BssECI CCNNGG 3 cut(s) 1660, 2136, 3751
BssHII GCGCGC 1 cut(s) 4144
BssNAI GTATAC 1 cut(s) 2108
BssNI GRCGYC 1 cut(s) 3421
BssSI CACGAG 1 cut(s) 3161
BssT1I CCWWGG 2 cut(s) 2136, 3751
Bst1107I GTATAC 1 cut(s) 2108
Bst2BI CACGAG 1 cut(s) 3161
Bst2UI CCWGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
Bst4CI ACNGT 8 cut(s) 204, 223, 295, 2401, 2643, 4261, 4270, 4291
Bst6I CTCTTC 4 cut(s) 2490, 2676, 4062, 4151
BstACI GRCGYC 1 cut(s) 3421
BstAPI GCANNNNNTGC 4 cut(s) 1349, 1414, 2339, 4247
BstAUI TGTACA 2 cut(s) 2966, 3896
BstBAI YACGTR 1 cut(s) 2779
BstBI TTCGAA 1 cut(s) 2825
BstDSI CCRYGG 2 cut(s) 2136, 3751
BstF5I GGATG 6 cut(s) 344, 1243, 2323, 2945, 3519, 4186
BstFNI CGCG 3 cut(s) 1786, 2281, 4146
BstH2I RGCGCY 1 cut(s) 2489
BstHHI GCGC 9 cut(s) 946, 1381, 1788, 2268, 2281, 2488, 3440, 4146, 4148
BstMAI GTCTC 5 cut(s) 1130, 1505, 2153, 2691, 4416
BstNI CCWGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
BstNSI RCATGY 3 cut(s) 1653, 3580, 3625
BstSCI CCNGG 7 cut(s) 541, 1128, 1207, 1659, 1951, 2434, 4074
BstSFI CTRYAG 4 cut(s) 3121, 3600, 3858, 4223
BstSLI GKGCMC 1 cut(s) 2287
BstUI CGCG 3 cut(s) 1786, 2281, 4146
BstV2I GAAGAC 2 cut(s) 2402, 2454
BstX2I RGATCY 8 cut(s) 18, 1488, 2129, 2188, 2212, 2954, 3946, 3965
BstXI CCANNNNNNTGG 2 cut(s) 3352, 3678
BstYI RGATCY 8 cut(s) 18, 1488, 2129, 2188, 2212, 2954, 3946, 3965
BstZ17I GTATAC 1 cut(s) 2108
Bsu15I ATCGAT 2 cut(s) 84, 4196
BsuI GTATCC 3 cut(s) 1822, 3024, 4275
BsuTUI ATCGAT 2 cut(s) 84, 4196
BtgI CCRYGG 2 cut(s) 2136, 3751
BtrI CACGTC 1 cut(s) 3926
BtsCI GGATG 6 cut(s) 344, 1243, 2323, 2945, 3519, 4186
BtsI GCAGTG 5 cut(s) 420, 519, 1674, 2550, 3309
CaiI CAGNNNCTG 2 cut(s) 1414, 3098
CciI TCATGA 1 cut(s) 3910
CfoI GCGC 9 cut(s) 946, 1381, 1788, 2268, 2281, 2488, 3440, 4146, 4148
Cfr13I GGNCC 4 cut(s) 974, 1399, 2197, 4072
ClaI ATCGAT 2 cut(s) 84, 4196
CseI GACGC 2 cut(s) 2170, 3210
Csp6I GTAC 6 cut(s) 208, 636, 1845, 2152, 2967, 3897
CviQI GTAC 6 cut(s) 208, 636, 1845, 2152, 2967, 3897
DrdI GACNNNNNNGTC 1 cut(s) 1122
DriI GACNNNNNGTC 1 cut(s) 1053
DseDI GACNNNNNNGTC 1 cut(s) 1122
EaeI YGGCCR 4 cut(s) 237, 3155, 3799, 4050
Eam1104I CTCTTC 4 cut(s) 2490, 2676, 4062, 4151
Eam1105I GACNNNNNGTC 1 cut(s) 1053
EarI CTCTTC 4 cut(s) 2490, 2676, 4062, 4151
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 2384
Eco130I CCWWGG 2 cut(s) 2136, 3751
Eco24I GRGCYC 1 cut(s) 2386
Eco31I GGTCTC 2 cut(s) 1130, 4416
Eco32I GATATC 4 cut(s) 130, 781, 1146, 2305
Eco47I GGWCC 3 cut(s) 974, 1399, 2197
Eco53kI GAGCTC 1 cut(s) 2384
Eco57I CTGAAG 7 cut(s) 419, 1090, 1280, 1475, 2448, 2640, 2816
Eco72I CACGTG 1 cut(s) 2779
EcoICRI GAGCTC 1 cut(s) 2384
EcoO109I RGGNCCY 2 cut(s) 2197, 4072
EcoRI GAATTC 1 cut(s) 1553
EcoRII CCWGG 7 cut(s) 541, 1128, 1207, 1659, 1951, 2434, 4074
EcoRV GATATC 4 cut(s) 130, 781, 1146, 2305
EcoT14I CCWWGG 2 cut(s) 2136, 3751
EcoT38I GRGCYC 1 cut(s) 2386
ErhI CCWWGG 2 cut(s) 2136, 3751
Esp3I CGTCTC 1 cut(s) 2153
FalI AAGNNNNNCTT 8 cut(s) 486, 518, 1953, 1985, 2148, 2180, 2732, 2764
FaqI GGGAC 4 cut(s) 396, 1913, 3118, 4131
FauNDI CATATG 2 cut(s) 2071, 3526
FbaI TGATCA 2 cut(s) 802, 2034
FblI GTMKAC 4 cut(s) 218, 1286, 2107, 2424
FokI GGATG 6 cut(s) 351, 1250, 2330, 2952, 3526, 4193
FriOI GRGCYC 1 cut(s) 2386
GlaI GCGC 9 cut(s) 945, 1380, 1787, 2267, 2280, 2487, 3439, 4145, 4147
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 6 cut(s) 1097, 1112, 1974, 3318, 3627, 4129
HaeII RGCGCY 1 cut(s) 2489
HapII CCGG 2 cut(s) 1989, 3802
HgaI GACGC 2 cut(s) 2170, 3210
HhaI GCGC 9 cut(s) 946, 1381, 1788, 2268, 2281, 2488, 3440, 4146, 4148
Hin1I GRCGYC 1 cut(s) 3421
Hin6I GCGC 9 cut(s) 944, 1379, 1786, 2266, 2279, 2486, 3438, 4144, 4146
HinP1I GCGC 9 cut(s) 944, 1379, 1786, 2266, 2279, 2486, 3438, 4144, 4146
HincII GTYRAC 2 cut(s) 2425, 2629
HindII GTYRAC 2 cut(s) 2425, 2629
HindIII AAGCTT 1 cut(s) 4391
HpaII CCGG 2 cut(s) 1989, 3802
HphI GGTGA 3 cut(s) 1043, 1223, 1265
Hpy99I CGWCG 1 cut(s) 4328
HpyCH4III ACNGT 8 cut(s) 204, 223, 295, 2401, 2643, 4261, 4270, 4291
HpyCH4IV ACGT 4 cut(s) 678, 2778, 3421, 3925
HpySE526I ACGT 4 cut(s) 678, 2778, 3421, 3925
Hsp92I GRCGYC 1 cut(s) 3421
HspAI GCGC 9 cut(s) 944, 1379, 1786, 2266, 2279, 2486, 3438, 4144, 4146
KpnI GGTACC 1 cut(s) 2155
Ksp22I TGATCA 2 cut(s) 802, 2034
MaeII ACGT 4 cut(s) 678, 2778, 3421, 3925
MaeIII GTNAC 7 cut(s) 679, 1253, 1578, 1636, 2410, 2499, 3304
MfeI CAATTG 4 cut(s) 228, 2666, 3676, 3900
MflI RGATCY 8 cut(s) 18, 1488, 2129, 2188, 2212, 2954, 3946, 3965
MhlI GDGCHC 3 cut(s) 2287, 2386, 2995
MlsI TGGCCA 2 cut(s) 3157, 4052
MluNI TGGCCA 2 cut(s) 3157, 4052
MlyI GAGTC 5 cut(s) 53, 1088, 1170, 1207, 3472
MmeI TCCRAC 5 cut(s) 90, 1068, 1315, 2625, 3974
Mox20I TGGCCA 2 cut(s) 3157, 4052
MroXI GAANNNNTTC 2 cut(s) 498, 2118
MscI TGGCCA 2 cut(s) 3157, 4052
MslI CAYNNNNRTG 3 cut(s) 724, 4005, 4307
Msp20I TGGCCA 2 cut(s) 3157, 4052
MspA1I CMGCKG 6 cut(s) 972, 1052, 1300, 2032, 4123, 4129
MspI CCGG 2 cut(s) 1989, 3802
MspR9I CCNGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
MunI CAATTG 4 cut(s) 228, 2666, 3676, 3900
Mva1269I GAATGC 2 cut(s) 1864, 2268
MvaI CCWGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
MvnI CGCG 3 cut(s) 1786, 2281, 4146
NcoI CCATGG 2 cut(s) 2136, 3751
NdeI CATATG 2 cut(s) 2071, 3526
NheI GCTAGC 1 cut(s) 4427
NlaIV GGNNCC 8 cut(s) 64, 1725, 1736, 1931, 1987, 2131, 2153, 4163
NmuCI GTSAC 2 cut(s) 1253, 3304
NspI RCATGY 3 cut(s) 1653, 3580, 3625
NspV TTCGAA 1 cut(s) 2825
OliI CACNNNNGTG 1 cut(s) 4307
PaeI GCATGC 1 cut(s) 3580
PagI TCATGA 1 cut(s) 3910
PauI GCGCGC 1 cut(s) 4144
PcsI WCGNNNNNNNCGW 1 cut(s) 2775
PctI GAATGC 2 cut(s) 1864, 2268
PdmI GAANNNNTTC 2 cut(s) 498, 2118
PflFI GACNNNGTC 2 cut(s) 2531, 3259
PfoI TCCNGGA 1 cut(s) 2434
PleI GAGTC 5 cut(s) 52, 1087, 1170, 1206, 3472
PmaCI CACGTG 1 cut(s) 2779
PmlI CACGTG 1 cut(s) 2779
PpsI GAGTC 5 cut(s) 52, 1087, 1170, 1206, 3472
Ppu21I YACGTR 1 cut(s) 2779
PpuMI RGGWCCY 1 cut(s) 2197
PshBI ATTAAT 1 cut(s) 740
PsiI TTATAA 2 cut(s) 2477, 2841
Psp124BI GAGCTC 1 cut(s) 2386
Psp1406I AACGTT 1 cut(s) 678
Psp5II RGGWCCY 1 cut(s) 2197
Psp6I CCWGG 7 cut(s) 541, 1128, 1207, 1659, 1951, 2434, 4074
PspCI CACGTG 1 cut(s) 2779
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 7 cut(s) 541, 1128, 1207, 1659, 1951, 2434, 4074
PspN4I GGNNCC 8 cut(s) 64, 1725, 1736, 1931, 1987, 2131, 2153, 4163
PspPI GGNCC 4 cut(s) 974, 1399, 2197, 4072
PspPPI RGGWCCY 1 cut(s) 2197
PstI CTGCAG 2 cut(s) 3862, 4227
PstNI CAGNNNCTG 2 cut(s) 1414, 3098
PsuI RGATCY 8 cut(s) 18, 1488, 2129, 2188, 2212, 2954, 3946, 3965
PsyI GACNNNGTC 2 cut(s) 2531, 3259
PteI GCGCGC 1 cut(s) 4144
PvuII CAGCTG 3 cut(s) 1052, 1300, 4129
RsaI GTAC 6 cut(s) 209, 637, 1846, 2153, 2968, 3898
RsaNI GTAC 6 cut(s) 208, 636, 1845, 2152, 2967, 3897
RseI CAYNNNNRTG 3 cut(s) 724, 4005, 4307
SacI GAGCTC 1 cut(s) 2386
SalI GTCGAC 1 cut(s) 2423
Sau96I GGNCC 4 cut(s) 974, 1399, 2197, 4072
ScaI AGTACT 1 cut(s) 1846
SchI GAGTC 5 cut(s) 53, 1088, 1170, 1207, 3472
ScrFI CCNGG 7 cut(s) 543, 1130, 1209, 1661, 1953, 2436, 4076
SduI GDGCHC 3 cut(s) 2287, 2386, 2995
SfcI CTRYAG 4 cut(s) 3121, 3600, 3858, 4223
SfuI TTCGAA 1 cut(s) 2825
SinI GGWCC 3 cut(s) 974, 1399, 2197
SmiMI CAYNNNNRTG 3 cut(s) 724, 4005, 4307
SmlI CTYRAG 3 cut(s) 767, 3942, 4028
SmoI CTYRAG 3 cut(s) 767, 3942, 4028
SpeI ACTAGT 2 cut(s) 3133, 4171
SphI GCATGC 1 cut(s) 3580
SsiI CCGC 8 cut(s) 5, 60, 122, 861, 972, 2030, 3199, 4123
SspI AATATT 3 cut(s) 109, 2119, 4406
SstI GAGCTC 1 cut(s) 2386
StyD4I CCNGG 7 cut(s) 541, 1128, 1207, 1659, 1951, 2434, 4074
StyI CCWWGG 2 cut(s) 2136, 3751
TaaI ACNGT 8 cut(s) 204, 223, 295, 2401, 2643, 4261, 4270, 4291
TaiI ACGT 4 cut(s) 681, 2781, 3424, 3928
TaqI TCGA 8 cut(s) 84, 2424, 2825, 2989, 3040, 3066, 3458, 4196
TatI WGTACW 4 cut(s) 635, 1844, 2966, 3896
TauI GCSGC 1 cut(s) 4126
TseFI GTSAC 2 cut(s) 1253, 3304
Tsp45I GTSAC 2 cut(s) 1253, 3304
TspGWI ACGGA 2 cut(s) 675, 2880
Tth111I GACNNNGTC 2 cut(s) 2531, 3259
VpaK11BI GGWCC 3 cut(s) 974, 1399, 2197
VspI ATTAAT 1 cut(s) 740
XapI RAATTY 8 cut(s) 434, 1516, 1553, 1890, 1936, 3370, 3586, 4244
XbaI TCTAGA 2 cut(s) 2191, 3424
XceI RCATGY 3 cut(s) 1653, 3580, 3625
XcmI CCANNNNNNNNNTGG 1 cut(s) 2939
XmiI GTMKAC 4 cut(s) 218, 1286, 2107, 2424
XmnI GAANNNNTTC 2 cut(s) 498, 2118
ZraI GACGTC 1 cut(s) 3422
ZrmI AGTACT 1 cut(s) 1846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.