FvH4_5g03800

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002044
Physical Location & Seq
Reverse (-)
2255364 .. 2261130
5767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03800.t1

Sequence Viewer

Length: 3846 bp
ATGGCTGAAGATGCTTTGAACACACCTCTGTTGGGTAGAGAATCGGATACTGCTGGTGAAATCACTTCAAATGACAATGTTACTCCTTATGCTAAAGCTGGTTTACTTAGTAGAATGTCATTCTGGTGGTTGAATCCATTACTAAAGAAAGGAAAGGGAAAGATTCTTGAGAATGAAGATATACCACAGCTGGGAGAAGCTGATCAAGCTCGAACATTGTACTTGATGTTTAAGGAGCAAGTGCAGAAAAGGAAGGAAAGCAGTTCTTCTGATGATGACCCTTCTATTTTGTCCACAATTTTTTTCTGCCAGAGGAAAGCTATTTTGGTTTCTGGTATCTTTGCACTCATCAAGGTTCTCACACTGACGAGCGGTCCACTGTTTCTCAGGGCCTTCATAAGGGTCGTTGAAGGAGAAGCGGCTTTTGAAGGTGAAGGTTATGCTTTGACTGCTGGTCTCTTTGTGGTTAAAGTTGTGGAGTCATTGTCCGAGAGACAATGGTTCTTCAGAACTAGACTTATTGGTCTCCAGGTAAGATCATTGATATCAGCAGCAATTTATCAGAAGCAATTAAGACTCTCAAATGCTGCCAAGATGACTCATTCTCCTGGTGAGATAGTGAATTACGTGAGTGTGGATGCTTACAAAATCGGTGAATTTCCATTCTGGTTTCATCAGATATGGTCCACTAGTCTCCAGTTGCTTCTTTCATTACTGATCTTTTACTACTCTGTGGGGATAGCAACTCTTGCAGCTATAACTGTAATCGTATTGACCGTGGTGGGAAGCTCTCCATTAGCAAAGTTGCAGCATGAGTATCAAACTAAGCTCATGGGAGCACAGAACAAGAGGTTGAAGGCCATTACAGAAGCGCTTTCCAATATGAAGATTTTGAAGCTGTATTCTTGGGAGACGAGTTTCAAGAAAGTCATCGAAGGGTTGAGAACTGAAGAACTCAAATGGATTGCAAAAGTACTGGAACAAAAGGGATATTACAATGTTCTATTCTGGTCATCTCCTATTGTGGTAGCAGCTGTCACTTTTTGGACATGCTACTTACTTGGATTTACACTCTCAGCTAGTAGTGCTTTTACATTTCTAGCAACTTTGCGTATTGTTCAGGAGCCAATCAAGCTGATCCCTGATGTTTTTGGAGCATTTATTGAAGCCAAGGTTTCATTCTCTCGGATCATGAAGTTCCTTGATGCACCAGAGTTGGAGCATAGAGATACAAGGAAACAGATCACTGACAAAGAGGCCGAGCATTCCATTTTGTTTAAAACCTTTGAAATTTCATGGGATACTAGTGCTACAAAGGCCACATTGAGGGACATCAATTTGGTGGTAAAACCAGGAGAAAAAGTTGCTATTTGTGGAGAGGTTGGCTCAGGCAAATCAACCCTTTTAGCTGCAATTCTTGGTGAAGTTCCACGAATCAATGGTGTTGTTGAAGTATATGGCACAATAGCATATGTATCTCAGTCTGCATGGATCCAAACAGGAACTATACAAGAAAATATACTGTTTGGAACTCCCATGGATCATGTAAGATATCGAGAAACACTTCAGAAGTGTTCCTTAGTAAAGGACCTTGACATGCTTCCATTTGGGGATCGCACTCAGATAGGAGAAAGAGGTGTCAATCTAAGTGGTGGGCAGAAGCAGCGCATTCAACTTGCGCGTGCACTCTATCAAAATGCTGATGTCTACCTCTTAGATGATCCTTTCAGTGCAGTTGATGCCCATACCGCGACCAGCCTGTTCAATGAATATGTCATGGGAGCTCTGGCTGAGAAGACGGTTCTGCTTGTGACACACCAAGTTGACTTCCTTCCGGCTTTTCATTCAATCTTGTTGATGTCTTCGGGGAGAATTTTAAAAGCGGCGCCTTATGATGAGTTGCTAGCTTCTTGTCAAGAGTTCCAAGACCTTGTAAATGCAAACAATGACACTGCTGGTTCCGAGAGGCCAACTGAAAATGCTTCTACTGGGAAACATAAATCATCTACAAAGGAAATTGATAAAGTAACTACTGAGGTACAGCTACAAGAGTCTGCAGGGGATCAATTGATTCAGAAAGAAGAGAGAGAAACCGGAGACATTGGTTTCAAGCCATACATTCAGTATTTGAAGCAGGGGAGGGGATTTTTCAACTTCTCCTTGTCAATTTTTCTGTACTCGATGTTTATAGTTGGACAGTTACTTCAGTTTTATTGGTTGGCATTGAACCTTCAAGATGATAGTGTATCCAGAGTCAAACTCTTTGCAGTTTATTCTGTGATCATGGCTGTCATGATAGCATCTTTGCTCATTCGATCTTTCTTTATAGTAGATTTAGGAGTAGGAGCAGGAAAGTCCATTTTTTCGACACTACTAAACTCTCTTTTCCGAGCACCAATGTTGTTTTATGACTCAACACCTGTGGGAAGAATCCTTAGTCGGGTGTCATCGGATATGAATATCATCGACCTTGAAGTAGCTTTCAAGTTGATAATTGCTGTTGGGGGAACCTTGAACACATACAGCATATTTCTAGTACTGGTTTATCTTACTTGGCCCATGGTGTTTCTAGTTGTCCCCACAATCTACATCACTATGCTCTTTCAGAACTACTACATGGCTTCTGCAAAAGAGTTGATGCGAATGAATGGCACAACTAAGTCTGCACTTGCAAGCCAGCTGGCTGAATCTATTGCTGGAGCCCTGACAATCAGAGCTTTCAGACAGGAGGACAGATTATTCACAAAGTACTTGGACTTTATTGATGTAAATGCTAGCACAGACTTCAATGGTTTTTCCACAAATGAGTGGTTGATTGAACGCCTGGAATTGCTATGTGCTATTGTTCTCTCAGCCGCAGCACTTGCCATTACTTTAACACCGTATTCCTCTTCTTCCTCTGGGTTTATTGGGATGACGTTGTCATATGGTCTCTCCTTAAATGTATTCCTCGTAATTTCTGTCAAATTTCAGTGCATGCTAGCAAATTCAATTATTTCTGTAGAAAGGGTAGAACAATACATGCATATTCCGAGTGAAGCCCCAGAAGTAATAGAAGACAACCGACCAATGGAAAATTGGCCTACTGTTGGCAAAGTGGAAATACTTGATTTAAAGGTAAGATATAGGCCCAATGCTCCTCTCGTTCTTCGTGGGATAACTTGCACAATCGAAGGAGGGTACAAAGTTGGAATTGTTGGCCGGACTGGAAGTGGAAAGACAACTCTTATCAGCATTTTGTTTAGACTTGTAGAGCCTACAGAGGGAAAGGTCATTGTAGATGGATATGATATTTGCACAATCGGACTTCATGATTTAAGATCATGTTTTGGGATCATCCCTCAAGATCCAACTCTATTCAGTGGGTCTGTGAGGTTCAATCTAGACCCCCTATCGAAGCATACTGATCATGAGATATGGCAGGTGCTTGAGAAATGTCAGTTACGAGAGGCCATTCAAGAAAAAGCAGAGGGCCTGGATTCTTTAGTTGAACAAGATGGAACAAATTGGAGCATGGGACAGCGACAACTGTTCTGTTTGGGGCGTGCTTTGTTGAAGAGGAGCCGAATACTAGTTCTTGATGAAGCCACTGCATCAATGGACAATGCAACAGACGCTATTCTTCAGAAAACTATAAGAACAGAATTTGCTGACTGCACTGTAATAACAGTGGCACATAGAATACCAACTGTGATGGACTGCACCAAGGTGCTTGCTATTGCTGATGGTAAACTGGTAGAGTATGATTCGCCAAAAAAGCTGATGAGCAATGAAGGATCATTATTCGGGCAGCTTGTCAAGGAATACTACACTCGTTCTGCCAATGTCGGTATATATCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1282

Amino Acids

142.82

Weight (kDa)

6.14

Isoelectric Point (pI)

31.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 109 - 376 9.2e-25 ABC transporter transmembrane region
ABC_tran PF00005 442 - 576 5.3e-22 ABC transporter
ABC_membrane PF00664 728 - 969 1.5e-24 ABC transporter transmembrane region
ABC_tran PF00005 1050 - 1198 9.9e-25 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3412
AasI GACNNNNNNGTC 1 cut(s) 522
Acc36I ACCTGC 1 cut(s) 3412
AccB1I GGYRCC 1 cut(s) 1885
AccBSI CCGCTC 1 cut(s) 372
AccI GTMKAC 1 cut(s) 1707
AccII CGCG 2 cut(s) 1681, 1751
AciI CCGC 5 cut(s) 372, 419, 1749, 1883, 2856
AcoI YGGCCR 1 cut(s) 3199
AcsI RAATTY 6 cut(s) 656, 1290, 1872, 2966, 2986, 3644
AcuI CTGAAG 6 cut(s) 27, 490, 969, 1550, 2189, 3608
AcyI GRCGYC 1 cut(s) 1886
AfaI GTAC 7 cut(s) 221, 975, 2040, 2177, 2538, 2750, 3182
AfeI AGCGCT 1 cut(s) 873
AfiI CCNNNNNNNGG 8 cut(s) 32, 191, 399, 1326, 2440, 3070, 3089, 3263
AhdI GACNNNNNGTC 2 cut(s) 372, 453
AhlI ACTAGT 3 cut(s) 689, 1304, 3571
AjnI CCWGG 5 cut(s) 528, 607, 1351, 2823, 3474
AjuI GAANNNNNNNTTGG 4 cut(s) 308, 340, 1163, 1195
AleI CACNNNNGTG 1 cut(s) 3707
Alw21I GWGCWC 4 cut(s) 841, 1687, 1786, 2395
Alw26I GTCTC 7 cut(s) 461, 487, 530, 698, 905, 2091, 2936
Alw44I GTGCAC 1 cut(s) 1683
Aor51HI AGCGCT 1 cut(s) 873
ApaLI GTGCAC 1 cut(s) 1683
ApeKI GCWGC 9 cut(s) 551, 587, 752, 808, 1031, 1409, 1663, 2858, 3790
ApoI RAATTY 6 cut(s) 656, 1290, 1872, 2966, 2986, 3644
Asp700I GAANNNNTTC 1 cut(s) 1563
AspLEI GCGC 4 cut(s) 874, 1668, 1681, 1888
AspS9I GGNCC 7 cut(s) 374, 390, 684, 1588, 2556, 3129, 3472
AsuHPI GGTGA 5 cut(s) 68, 443, 623, 665, 1433
AsuNHI GCTAGC 3 cut(s) 1903, 2774, 2980
AvaII GGWCC 3 cut(s) 374, 684, 1588
BaeGI GKGCMC 1 cut(s) 1687
BamHI GGATCC 1 cut(s) 1491
BanI GGYRCC 1 cut(s) 1885
BanII GRGCYC 2 cut(s) 1786, 2704
BbsI GAAGAC 3 cut(s) 1802, 1854, 3063
Bbv12I GWGCWC 4 cut(s) 841, 1687, 1786, 2395
BbvI GCAGC 9 cut(s) 563, 574, 764, 820, 1043, 1396, 1675, 2870, 3802
BccI CCATC 4 cut(s) 3275, 3491, 3688, 3719
BciT130I CCWGG 5 cut(s) 530, 609, 1353, 2825, 3476
BciVI GTATCC 3 cut(s) 40, 1294, 2257
BclI TGATCA 3 cut(s) 202, 2280, 3406
BcoDI GTCTC 7 cut(s) 461, 487, 530, 698, 905, 2091, 2936
BcuI ACTAGT 3 cut(s) 689, 1304, 3571
BfmI CTRYAG 3 cut(s) 2055, 3000, 3258
BfoI RGCGCY 2 cut(s) 875, 1889
BfuAI ACCTGC 1 cut(s) 3412
BfuI GTATCC 3 cut(s) 40, 1294, 2257
BmcAI AGTACT 3 cut(s) 975, 2538, 2750
Bme1390I CCNGG 5 cut(s) 530, 609, 1353, 2825, 3476
Bme18I GGWCC 3 cut(s) 374, 684, 1588
BmeRI GACNNNNNGTC 2 cut(s) 372, 453
BmgT120I GGNCC 7 cut(s) 374, 390, 684, 1588, 2556, 3129, 3472
BmiI GGNNCC 7 cut(s) 1125, 1493, 1887, 1960, 2509, 2701, 3563
BmrFI CCNGG 5 cut(s) 530, 609, 1353, 2825, 3476
BmrI ACTGGG 1 cut(s) 1998
BmsI GCATC 6 cut(s) 628, 1195, 1729, 2309, 2628, 3602
BmtI GCTAGC 3 cut(s) 1907, 2778, 2984
BmuI ACTGGG 1 cut(s) 1998
BpiI GAAGAC 3 cut(s) 1802, 1854, 3063
BplI GAGNNNNNCTC 4 cut(s) 1370, 1402, 2244, 2276
BpmI CTGGAG 3 cut(s) 512, 680, 2718
Bpu10I CCTNAGC 1 cut(s) 1387
BpuEI CTTGAG 3 cut(s) 188, 3327, 3449
BsaAI YACGTR 1 cut(s) 628
BsaHI GRCGYC 1 cut(s) 1886
BsaI GGTCTC 3 cut(s) 461, 530, 2936
BsaJI CCNNGG 5 cut(s) 777, 1170, 1536, 2559, 3705
BsaWI WCCGGW 1 cut(s) 2093
BsaXI ACNNNNNCTCC 6 cut(s) 470, 500, 589, 619, 1347, 1377
Bsc4I CCNNNNNNNGG 8 cut(s) 32, 191, 399, 1326, 2440, 3070, 3089, 3263
Bse1I ACTGG 6 cut(s) 697, 981, 1993, 2544, 3211, 3738
Bse3DI GCAATG 1 cut(s) 3775
BseBI CCWGG 5 cut(s) 530, 609, 1353, 2825, 3476
BseDI CCNNGG 5 cut(s) 777, 1170, 1536, 2559, 3705
BseGI GGATG 3 cut(s) 643, 2919, 3336
BseLI CCNNNNNNNGG 8 cut(s) 32, 191, 399, 1326, 2440, 3070, 3089, 3263
BseMI GCAATG 1 cut(s) 3775
BseMII CTCAG 8 cut(s) 400, 1089, 1401, 1493, 1634, 1782, 2025, 2865
BseNI ACTGG 6 cut(s) 697, 981, 1993, 2544, 3211, 3738
BseRI GAGGAG 2 cut(s) 3129, 3574
BseSI GKGCMC 1 cut(s) 1687
BseXI GCAGC 9 cut(s) 563, 574, 764, 820, 1043, 1396, 1675, 2870, 3802
BseYI CCCAGC 1 cut(s) 190
BsgI GTGCAG 5 cut(s) 263, 1752, 2649, 3640, 3685
Bsh1236I CGCG 2 cut(s) 1681, 1751
BshNI GGYRCC 1 cut(s) 1885
BsiHKAI GWGCWC 4 cut(s) 841, 1687, 1786, 2395
BsiSI CCGG 3 cut(s) 1835, 2094, 3202
BslFI GGGAC 3 cut(s) 1343, 2561, 3531
BslI CCNNNNNNNGG 8 cut(s) 32, 191, 399, 1326, 2440, 3070, 3089, 3263
BsmAI GTCTC 7 cut(s) 461, 487, 530, 698, 905, 2091, 2936
BsmBI CGTCTC 1 cut(s) 905
BsmFI GGGAC 3 cut(s) 1343, 2561, 3531
BsmI GAATGC 2 cut(s) 1264, 1668
Bso31I GGTCTC 3 cut(s) 461, 530, 2936
Bsp1286I GDGCHC 5 cut(s) 841, 1687, 1786, 2395, 2704
Bsp19I CCATGG 2 cut(s) 1536, 2559
BspACI CCGC 5 cut(s) 372, 419, 1749, 1883, 2856
BspCNI CTCAG 8 cut(s) 399, 1088, 1400, 1492, 1633, 1783, 2026, 2864
BspFNI CGCG 2 cut(s) 1681, 1751
BspHI TCATGA 4 cut(s) 1191, 2292, 3310, 3409
BspLI GGNNCC 7 cut(s) 1125, 1493, 1887, 1960, 2509, 2701, 3563
BspMAI CTGCAG 1 cut(s) 2059
BspMI ACCTGC 1 cut(s) 3412
BspOI GCTAGC 3 cut(s) 1907, 2778, 2984
BspT107I GGYRCC 1 cut(s) 1885
BspTNI GGTCTC 3 cut(s) 461, 530, 2936
BsrBI CCGCTC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 3775
BsrI ACTGG 6 cut(s) 697, 981, 1993, 2544, 3211, 3738
BssECI CCNNGG 5 cut(s) 777, 1170, 1536, 2559, 3705
BssNI GRCGYC 1 cut(s) 1886
BssT1I CCWWGG 4 cut(s) 1170, 1536, 2559, 3705
Bst2UI CCWGG 5 cut(s) 530, 609, 1353, 2825, 3476
Bst6I CTCTTC 3 cut(s) 2076, 2896, 3551
BstACI GRCGYC 1 cut(s) 1886
BstAPI GCANNNNNTGC 3 cut(s) 749, 1739, 2864
BstBAI YACGTR 1 cut(s) 628
BstDSI CCRYGG 3 cut(s) 777, 1536, 2559
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 643, 2919, 3336
BstFNI CGCG 2 cut(s) 1681, 1751
BstH2I RGCGCY 2 cut(s) 875, 1889
BstHHI GCGC 4 cut(s) 874, 1668, 1681, 1888
BstMAI GTCTC 7 cut(s) 461, 487, 530, 698, 905, 2091, 2936
BstNI CCWGG 5 cut(s) 530, 609, 1353, 2825, 3476
BstNSI RCATGY 4 cut(s) 1053, 1600, 2980, 3025
BstSCI CCNGG 5 cut(s) 528, 607, 1351, 2823, 3474
BstSFI CTRYAG 3 cut(s) 2055, 3000, 3258
BstSLI GKGCMC 1 cut(s) 1687
BstUI CGCG 2 cut(s) 1681, 1751
BstV1I GCAGC 9 cut(s) 563, 574, 764, 820, 1043, 1396, 1675, 2870, 3802
BstV2I GAAGAC 3 cut(s) 1802, 1854, 3063
BstX2I RGATCY 2 cut(s) 1491, 3346
BstYI RGATCY 2 cut(s) 1491, 3346
BsuI GTATCC 3 cut(s) 40, 1294, 2257
BtgI CCRYGG 3 cut(s) 777, 1536, 2559
BtsCI GGATG 3 cut(s) 643, 2919, 3336
BtsI GCAGTG 2 cut(s) 1950, 3588
BveI ACCTGC 1 cut(s) 3412
CciI TCATGA 4 cut(s) 1191, 2292, 3310, 3409
CfoI GCGC 4 cut(s) 874, 1668, 1681, 1888
Cfr13I GGNCC 7 cut(s) 374, 390, 684, 1588, 2556, 3129, 3472
CseI GACGC 1 cut(s) 3623
Csp6I GTAC 7 cut(s) 220, 974, 2039, 2176, 2537, 2749, 3181
CspCI CAANNNNNGTGG 4 cut(s) 1630, 1665, 2403, 2438
CviQI GTAC 7 cut(s) 220, 974, 2039, 2176, 2537, 2749, 3181
DinI GGCGCC 1 cut(s) 1887
DraI TTTAAA 3 cut(s) 1279, 1878, 3114
DrdI GACNNNNNNGTC 1 cut(s) 522
DriI GACNNNNNGTC 2 cut(s) 372, 453
DseDI GACNNNNNNGTC 1 cut(s) 522
EaeI YGGCCR 1 cut(s) 3199
Eam1104I CTCTTC 3 cut(s) 2076, 2896, 3551
Eam1105I GACNNNNNGTC 2 cut(s) 372, 453
EarI CTCTTC 3 cut(s) 2076, 2896, 3551
Ecl136II GAGCTC 1 cut(s) 1784
Eco130I CCWWGG 4 cut(s) 1170, 1536, 2559, 3705
Eco24I GRGCYC 2 cut(s) 1786, 2704
Eco31I GGTCTC 3 cut(s) 461, 530, 2936
Eco32I GATATC 2 cut(s) 546, 1553
Eco47I GGWCC 3 cut(s) 374, 684, 1588
Eco47III AGCGCT 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 1784
Eco57I CTGAAG 6 cut(s) 27, 490, 969, 1550, 2189, 3608
EcoICRI GAGCTC 1 cut(s) 1784
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoO109I RGGNCCY 3 cut(s) 390, 1588, 3472
EcoRII CCWGG 5 cut(s) 528, 607, 1351, 2823, 3474
EcoRV GATATC 2 cut(s) 546, 1553
EcoT14I CCWWGG 4 cut(s) 1170, 1536, 2559, 3705
EcoT22I ATGCAT 1 cut(s) 3027
EcoT38I GRGCYC 2 cut(s) 1786, 2704
EgeI GGCGCC 1 cut(s) 1887
EheI GGCGCC 1 cut(s) 1887
ErhI CCWWGG 4 cut(s) 1170, 1536, 2559, 3705
Esp3I CGTCTC 1 cut(s) 905
FalI AAGNNNNNCTT 4 cut(s) 250, 282, 1562, 1594
FaqI GGGAC 3 cut(s) 1343, 2561, 3531
FauNDI CATATG 2 cut(s) 1471, 2926
FbaI TGATCA 3 cut(s) 202, 2280, 3406
FblI GTMKAC 1 cut(s) 1707
FokI GGATG 3 cut(s) 650, 2926, 3323
FriOI GRGCYC 2 cut(s) 1786, 2704
GlaI GCGC 4 cut(s) 873, 1667, 1680, 1887
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 3 cut(s) 512, 680, 2718
HaeII RGCGCY 2 cut(s) 875, 1889
HapII CCGG 3 cut(s) 1835, 2094, 3202
HgaI GACGC 1 cut(s) 3623
HhaI GCGC 4 cut(s) 874, 1668, 1681, 1888
Hin1I GRCGYC 1 cut(s) 1886
Hin6I GCGC 4 cut(s) 872, 1666, 1679, 1886
HinP1I GCGC 4 cut(s) 872, 1666, 1679, 1886
HincII GTYRAC 1 cut(s) 1825
HindII GTYRAC 1 cut(s) 1825
HpaII CCGG 3 cut(s) 1835, 2094, 3202
HphI GGTGA 5 cut(s) 68, 443, 623, 665, 1433
Hpy166II GTNNAC 8 cut(s) 104, 294, 377, 687, 1685, 1708, 1825, 3731
Hpy8I GTNNAC 8 cut(s) 104, 294, 377, 687, 1685, 1708, 1825, 3731
HpyCH4IV ACGT 2 cut(s) 627, 2918
HpySE526I ACGT 2 cut(s) 627, 2918
Hsp92I GRCGYC 1 cut(s) 1886
HspAI GCGC 4 cut(s) 872, 1666, 1679, 1886
KasI GGCGCC 1 cut(s) 1885
Ksp22I TGATCA 3 cut(s) 202, 2280, 3406
Lsp1109I GCAGC 9 cut(s) 563, 574, 764, 820, 1043, 1396, 1675, 2870, 3802
LweI GCATC 6 cut(s) 628, 1195, 1729, 2309, 2628, 3602
MaeII ACGT 2 cut(s) 627, 2918
MaeIII GTNAC 6 cut(s) 79, 1036, 1810, 2026, 2199, 3441
MbiI CCGCTC 1 cut(s) 372
MfeI CAATTG 1 cut(s) 2066
MflI RGATCY 2 cut(s) 1491, 3346
MhlI GDGCHC 5 cut(s) 841, 1687, 1786, 2395, 2704
Mly113I GGCGCC 1 cut(s) 1886
MlyI GAGTC 6 cut(s) 488, 570, 592, 2060, 2262, 2405
MmeI TCCRAC 4 cut(s) 1197, 2173, 3169, 3374
Mph1103I ATGCAT 1 cut(s) 3027
MroXI GAANNNNTTC 1 cut(s) 1563
MseI TTAA 9 cut(s) 231, 468, 572, 1278, 1877, 2876, 2939, 3113, 3317
MslI CAYNNNNRTG 3 cut(s) 124, 2594, 3707
MspA1I CMGCKG 3 cut(s) 190, 1034, 2680
MspI CCGG 3 cut(s) 1835, 2094, 3202
MspR9I CCNGG 5 cut(s) 530, 609, 1353, 2825, 3476
MunI CAATTG 1 cut(s) 2066
Mva1269I GAATGC 2 cut(s) 1264, 1668
MvaI CCWGG 5 cut(s) 530, 609, 1353, 2825, 3476
MvnI CGCG 2 cut(s) 1681, 1751
NarI GGCGCC 1 cut(s) 1886
NcoI CCATGG 2 cut(s) 1536, 2559
NdeI CATATG 2 cut(s) 1471, 2926
NheI GCTAGC 3 cut(s) 1903, 2774, 2980
NlaIV GGNNCC 7 cut(s) 1125, 1493, 1887, 1960, 2509, 2701, 3563
NmeAIII GCCGAG 1 cut(s) 1285
NmuCI GTSAC 2 cut(s) 1036, 1810
NsiI ATGCAT 1 cut(s) 3027
NspI RCATGY 4 cut(s) 1053, 1600, 2980, 3025
OliI CACNNNNGTG 1 cut(s) 3707
PaeI GCATGC 1 cut(s) 2980
PagI TCATGA 4 cut(s) 1191, 2292, 3310, 3409
PaqCI CACCTGC 1 cut(s) 3412
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 2 cut(s) 1264, 1668
PdmI GAANNNNTTC 1 cut(s) 1563
PfeI GAWTC 9 cut(s) 41, 133, 163, 1434, 2071, 2430, 2687, 3479, 3746
PflFI GACNNNGTC 1 cut(s) 2920
PleI GAGTC 6 cut(s) 487, 570, 592, 2059, 2261, 2405
PluTI GGCGCC 1 cut(s) 1889
PpsI GAGTC 6 cut(s) 487, 570, 592, 2059, 2261, 2405
Ppu21I YACGTR 1 cut(s) 628
PpuMI RGGWCCY 1 cut(s) 1588
Psp124BI GAGCTC 1 cut(s) 1786
Psp5II RGGWCCY 1 cut(s) 1588
Psp6I CCWGG 5 cut(s) 528, 607, 1351, 2823, 3474
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 5 cut(s) 528, 607, 1351, 2823, 3474
PspN4I GGNNCC 7 cut(s) 1125, 1493, 1887, 1960, 2509, 2701, 3563
PspPI GGNCC 7 cut(s) 374, 390, 684, 1588, 2556, 3129, 3472
PspPPI RGGWCCY 1 cut(s) 1588
PstI CTGCAG 1 cut(s) 2059
PsuI RGATCY 2 cut(s) 1491, 3346
PsyI GACNNNGTC 1 cut(s) 2920
PvuII CAGCTG 3 cut(s) 190, 1034, 2680
RsaI GTAC 7 cut(s) 221, 975, 2040, 2177, 2538, 2750, 3182
RsaNI GTAC 7 cut(s) 220, 974, 2039, 2176, 2537, 2749, 3181
RseI CAYNNNNRTG 3 cut(s) 124, 2594, 3707
SacI GAGCTC 1 cut(s) 1786
SaqAI TTAA 9 cut(s) 231, 468, 572, 1278, 1877, 2876, 2939, 3113, 3317
Sau96I GGNCC 7 cut(s) 374, 390, 684, 1588, 2556, 3129, 3472
ScaI AGTACT 3 cut(s) 975, 2538, 2750
SchI GAGTC 6 cut(s) 488, 570, 592, 2060, 2262, 2405
ScrFI CCNGG 5 cut(s) 530, 609, 1353, 2825, 3476
SduI GDGCHC 5 cut(s) 841, 1687, 1786, 2395, 2704
SfaNI GCATC 6 cut(s) 628, 1195, 1729, 2309, 2628, 3602
SfcI CTRYAG 3 cut(s) 2055, 3000, 3258
SfoI GGCGCC 1 cut(s) 1887
SinI GGWCC 3 cut(s) 374, 684, 1588
SmiMI CAYNNNNRTG 3 cut(s) 124, 2594, 3707
SmlI CTYRAG 3 cut(s) 167, 3342, 3428
SmoI CTYRAG 3 cut(s) 167, 3342, 3428
SpeI ACTAGT 3 cut(s) 689, 1304, 3571
SphI GCATGC 1 cut(s) 2980
SsiI CCGC 5 cut(s) 372, 419, 1749, 1883, 2856
SspDI GGCGCC 1 cut(s) 1885
SstI GAGCTC 1 cut(s) 1786
StyD4I CCNGG 5 cut(s) 528, 607, 1351, 2823, 3474
StyI CCWWGG 4 cut(s) 1170, 1536, 2559, 3705
TaiI ACGT 2 cut(s) 630, 2921
TaqI TCGA 9 cut(s) 211, 933, 1555, 2180, 2314, 2366, 2466, 3171, 3395
TatI WGTACW 5 cut(s) 219, 973, 2175, 2536, 2748
TauI GCSGC 3 cut(s) 422, 1886, 2858
TfiI GAWTC 9 cut(s) 41, 133, 163, 1434, 2071, 2430, 2687, 3479, 3746
Tru1I TTAA 9 cut(s) 231, 468, 572, 1278, 1877, 2876, 2939, 3113, 3317
Tru9I TTAA 9 cut(s) 231, 468, 572, 1278, 1877, 2876, 2939, 3113, 3317
TseFI GTSAC 2 cut(s) 1036, 1810
TseI GCWGC 9 cut(s) 551, 587, 752, 808, 1031, 1409, 1663, 2858, 3790
Tsp45I GTSAC 2 cut(s) 1036, 1810
Tth111I GACNNNGTC 1 cut(s) 2920
VneI GTGCAC 1 cut(s) 1683
VpaK11BI GGWCC 3 cut(s) 374, 684, 1588
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 6 cut(s) 656, 1290, 1872, 2966, 2986, 3644
XbaI TCTAGA 1 cut(s) 3382
XceI RCATGY 4 cut(s) 1053, 1600, 2980, 3025
XcmI CCANNNNNNNNNTGG 2 cut(s) 3075, 3595
XmiI GTMKAC 1 cut(s) 1707
XmnI GAANNNNTTC 1 cut(s) 1563
ZrmI AGTACT 3 cut(s) 975, 2538, 2750
Zsp2I ATGCAT 1 cut(s) 3027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.