Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Reverse (-)

8504131 .. 8505583

Gene Structure 1453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAAGGAGAGAGCAGTGTAAAACTACACGAAATGTGGGCAAGTACTTACTCCAAGAGAGTGGAACTGGCCCTCAAACTCAAAGGCATACCTTATGAGTACATGGAAGAAGATTTTACAAACAAGAGTCAATTGCTCCTCAAATACAATCCAGTTCACAAAAAGGTTCCAGTGCTTGTCCACGATGGGAAGCCTATAGCCGAGTCGTACATCATCCTAGAATACATTGACGAAACTTGGAAGACTGGTCCTAAGCTGTTTCCTGAAGATCCTTATGAAAGAGCCAAATTTCGATTCTGGGCTAGCTTTATCCAGCAACAGTTGTTTGAGAGCTTCAGCAGAGTAGTGATAAGTCAGGGACAGGGTGAAGCACTAGAACAAGCGGTGAAGGACGTATTTGAGAGACTGGGAGTATTTGAAGAAGGAATGAAGGAGTATCTTGCAGGAGGTGCTTCTTTCACCAATGGCGAGAATTTGGGACTTCTAGATATACTGATGGTTGTCACATTCAGCCCTCATAAGGTTCATGAAGAAGTGTTTGGTATCAAAACGATGGATCCAGATAGGTATCCATTACTGTTCTCATGGATCACCGCACTGAATGAACATCCCTTGGTGAAACAAATAAGCCCTCCTCATGACAAGCTTGTTGAGCTCCTTCAAATTTATAAACCAACAAATCAAGCTAGAGGGAGTGAATCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

236

Amino Acids

27.07

Weight (kDa)

5.54

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	1.7e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	1.3e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	5.4e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AciI	CCGC	2 cut(s)	383, 594
AclWI	GGATC	4 cut(s)	263, 551, 564, 596
AcsI	RAATTY	3 cut(s)	287, 472, 663
AcuI	CTGAAG	2 cut(s)	285, 319
AfaI	GTAC	3 cut(s)	46, 101, 209
AfiI	CCNNNNNNNGG	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	419, 662
AjuI	GAANNNNNNNTTGG	4 cut(s)	278, 310, 522, 554
AluBI	AGCT	6 cut(s)	256, 306, 333, 646, 655, 686
AluI	AGCT	6 cut(s)	256, 306, 333, 646, 655, 686
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	4 cut(s)	263, 551, 564, 596
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	3 cut(s)	287, 472, 663
AspS9I	GGNCC	2 cut(s)	70, 248
AsuHPI	GGTGA	5 cut(s)	377, 397, 451, 583, 628
AsuNHI	GCTAGC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	248
BamHI	GGATCC	1 cut(s)	556
BanII	GRGCYC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	657
BccI	CCATC	3 cut(s)	179, 490, 547
BciVI	GTATCC	1 cut(s)	579
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	5 cut(s)	218, 303, 374, 485, 687
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	579
BmcAI	AGTACT	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	70, 248
BmiI	GGNNCC	2 cut(s)	168, 558
BmrI	ACTGGG	1 cut(s)	416
BmtI	GCTAGC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	567
BsaJI	CCNNGG	1 cut(s)	612
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse1I	ACTGG	5 cut(s)	72, 152, 170, 250, 411
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	2 cut(s)	213, 607
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseNI	ACTGG	5 cut(s)	72, 152, 170, 250, 411
BseRI	GAGGAG	2 cut(s)	128, 624
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	657
BslFI	GGGAC	2 cut(s)	372, 492
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	2 cut(s)	372, 492
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	3 cut(s)	268, 556, 588
BspACI	CCGC	2 cut(s)	383, 594
BspANI	GGCC	1 cut(s)	71
BspHI	TCATGA	2 cut(s)	526, 637
BspLI	GGNNCC	2 cut(s)	168, 558
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	4 cut(s)	263, 551, 564, 596
BsrI	ACTGG	5 cut(s)	72, 152, 170, 250, 411
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	3 cut(s)	268, 556, 588
BssT1I	CCWWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	321, 579
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	213, 607
BstKTI	GATC	3 cut(s)	271, 559, 591
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	268, 556, 588
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 652
BstSFI	CTRYAG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	2 cut(s)	268, 556
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	2 cut(s)	268, 556
BsuI	GTATCC	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	2 cut(s)	213, 607
BtsI	GCAGTG	1 cut(s)	22
BtsIMutI	CAGTG	3 cut(s)	22, 177, 596
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	2 cut(s)	526, 637
Cfr13I	GGNCC	2 cut(s)	70, 248
Csp6I	GTAC	3 cut(s)	45, 100, 208
CviAII	CATG	4 cut(s)	103, 527, 585, 638
CviQI	GTAC	3 cut(s)	45, 100, 208
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	270, 558, 590
DpnII	GATC	3 cut(s)	268, 556, 588
Ecl136II	GAGCTC	1 cut(s)	655
Eco130I	CCWWGG	1 cut(s)	612
Eco24I	GRGCYC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	248
Eco53kI	GAGCTC	1 cut(s)	655
Eco57I	CTGAAG	2 cut(s)	285, 319
EcoICRI	GAGCTC	1 cut(s)	655
EcoT14I	CCWWGG	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	657
ErhI	CCWWGG	1 cut(s)	612
FaeI	CATG	4 cut(s)	106, 530, 588, 641
FaqI	GGGAC	2 cut(s)	372, 492
FatI	CATG	4 cut(s)	102, 526, 584, 637
FokI	GGATG	2 cut(s)	200, 594
FriOI	GRGCYC	1 cut(s)	657
FspBI	CTAG	5 cut(s)	218, 303, 374, 485, 687
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	4 cut(s)	106, 530, 588, 641
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	4 cut(s)	127, 203, 294, 698
HphI	GGTGA	5 cut(s)	377, 397, 451, 583, 628
Hpy166II	GTNNAC	2 cut(s)	157, 181
Hpy188III	TCNNGA	5 cut(s)	263, 485, 527, 560, 638
Hpy8I	GTNNAC	2 cut(s)	157, 181
HpyAV	CCTTC	4 cut(s)	382, 416, 424, 668
HpyCH4III	ACNGT	2 cut(s)	321, 579
HpyCH4IV	ACGT	1 cut(s)	393
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 652
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	393
Hsp92II	CATG	4 cut(s)	106, 530, 588, 641
Kzo9I	GATC	3 cut(s)	268, 556, 588
LmnI	GCTCC	2 cut(s)	141, 660
MaeI	CTAG	5 cut(s)	218, 303, 374, 485, 687
MaeII	ACGT	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	502
MalI	GATC	3 cut(s)	270, 558, 590
MboI	GATC	3 cut(s)	268, 556, 588
MboII	GAAGA	6 cut(s)	119, 122, 253, 278, 431, 542
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	2 cut(s)	268, 556
MhlI	GDGCHC	1 cut(s)	657
MluCI	AATT	4 cut(s)	131, 287, 472, 663
MlyI	GAGTC	2 cut(s)	136, 212
MnlI	CCTC	7 cut(s)	83, 149, 440, 525, 642, 645, 683
MseI	TTAA	1 cut(s)	706
MunI	CAATTG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	449, 652
NdeII	GATC	3 cut(s)	268, 556, 588
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	106, 530, 588, 641
NlaIV	GGNNCC	2 cut(s)	168, 558
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	502
PagI	TCATGA	2 cut(s)	526, 637
PfeI	GAWTC	2 cut(s)	294, 698
PleI	GAGTC	2 cut(s)	135, 211
PpsI	GAGTC	2 cut(s)	135, 211
PsiI	TTATAA	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	657
PspN4I	GGNNCC	2 cut(s)	168, 558
PspPI	GGNCC	2 cut(s)	70, 248
PsuI	RGATCY	2 cut(s)	268, 556
RsaI	GTAC	3 cut(s)	46, 101, 209
RsaNI	GTAC	3 cut(s)	45, 100, 208
SacI	GAGCTC	1 cut(s)	657
SaqAI	TTAA	1 cut(s)	706
Sau3AI	GATC	3 cut(s)	268, 556, 588
Sau96I	GGNCC	2 cut(s)	70, 248
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	136, 212
SduI	GDGCHC	1 cut(s)	657
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	4 cut(s)	131, 287, 472, 663
SsiI	CCGC	2 cut(s)	383, 594
SspMI	CTAG	5 cut(s)	218, 303, 374, 485, 687
SstI	GAGCTC	1 cut(s)	657
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	2 cut(s)	321, 579
TaiI	ACGT	1 cut(s)	396
TaqI	TCGA	1 cut(s)	292
TasI	AATT	4 cut(s)	131, 287, 472, 663
TatI	WGTACW	2 cut(s)	44, 99
TfiI	GAWTC	2 cut(s)	294, 698
Tru1I	TTAA	1 cut(s)	706
Tru9I	TTAA	1 cut(s)	706
TscAI	CASTG	3 cut(s)	22, 177, 603
TseFI	GTSAC	1 cut(s)	502
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	5 cut(s)	291, 443, 515, 543, 618
TspRI	CASTG	3 cut(s)	22, 177, 603
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	3 cut(s)	287, 472, 663
XbaI	TCTAGA	1 cut(s)	484
XspI	CTAG	5 cut(s)	218, 303, 374, 485, 687
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.