Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Reverse (-)

65845647 .. 65846219

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005200

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGAGGGAAAAAACGAAGTAAAACTACATGGAATGTGGGCTAGTGCTTACTCTAAGAGAGTGGAACTGGCCCTCAGACTCAAAGGCATACATTATGAGTACATAGAAGAGGATTTGAGCAACAAGAGCCAGTTGTTCCTCGAGTACAATCCAGTTCACAAGAAGGTACCTGTACTCATCCACAATGGAAAACCCATTGCCGAGTCACACATCATCCTAGAATACATCGACGAAACTTGGAAGACTGCTCCTAAGCTCCTGCCTGAAGATCCTTACGAAAGAGCCAAAGTTCGATTCTGGGCTAGTTTTATCCAGCAACAGTTGTTTGAGAGCATACTCAAACTGGTGACAAGTCATGGGGAAGCACAAGAAAAAGCAGCCGCGGAAGTGATTGAGAGGCAGGGAGTGTTTGAAGAAGGAATGAAGGAGTATTTTGGAGGAGGTGCTTCTTTCACTAATGAGAAGAATTGGGGGCGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

161

Amino Acids

18.54

Weight (kDa)

6.09

Isoelectric Point (pI)

39.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	3.7e-19	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	4.8e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	3.7e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	383
AciI	CCGC	2 cut(s)	381, 383
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	4 cut(s)	101, 146, 168, 174
AgsI	TTSAA	1 cut(s)	413
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	377
Asp718I	GGTACC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	389
BfaI	CTAG	4 cut(s)	42, 218, 303, 481
BfoI	RGCGCY	1 cut(s)	478
BisI	GCNGC	2 cut(s)	378, 381
BlsI	GCNGC	2 cut(s)	379, 382
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	381
Bse1I	ACTGG	4 cut(s)	72, 130, 152, 348
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	177, 213
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	4 cut(s)	72, 130, 152, 348
BseRI	GAGGAG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	140
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	2 cut(s)	381, 383
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	4 cut(s)	72, 130, 152, 348
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	3 cut(s)	54, 74, 252
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	177, 213
BstFNI	CGCG	1 cut(s)	383
BstH2I	RGCGCY	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	2 cut(s)	177, 213
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	1 cut(s)	70
Cfr42I	CCGCGG	1 cut(s)	384
Csp6I	GTAC	4 cut(s)	100, 145, 167, 173
CviAII	CATG	2 cut(s)	29, 356
CviJI	RGCY	7 cut(s)	41, 71, 129, 256, 284, 302, 380
CviKI_1	RGCY	7 cut(s)	41, 71, 129, 256, 284, 302, 380
CviQI	GTAC	4 cut(s)	100, 145, 167, 173
DdeI	CTNAG	3 cut(s)	54, 74, 252
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	140
FaeI	CATG	2 cut(s)	32, 359
FaiI	YATR	6 cut(s)	30, 89, 96, 104, 335, 357
FatI	CATG	2 cut(s)	28, 355
Fnu4HI	GCNGC	2 cut(s)	378, 381
FokI	GGATG	2 cut(s)	164, 200
Fsp4HI	GCNGC	2 cut(s)	378, 381
FspBI	CTAG	4 cut(s)	42, 218, 303, 481
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	2 cut(s)	378, 381
HaeII	RGCGCY	1 cut(s)	478
HaeIII	GGCC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	2 cut(s)	32, 359
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HinfI	GANTC	3 cut(s)	78, 203, 294
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	3 cut(s)	157, 410, 418
HpyCH4III	ACNGT	1 cut(s)	321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	3 cut(s)	54, 74, 252
Hsp92II	CATG	2 cut(s)	32, 359
HspAI	GCGC	1 cut(s)	475
KpnI	GGTACC	1 cut(s)	170
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	253, 261
Lsp1109I	GCAGC	1 cut(s)	389
MaeI	CTAG	4 cut(s)	42, 218, 303, 481
MaeIII	GTNAC	2 cut(s)	204, 346
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	5 cut(s)	119, 253, 278, 425, 475
MflI	RGATCY	1 cut(s)	268
MluCI	AATT	1 cut(s)	466
MlyI	GAGTC	2 cut(s)	72, 212
MnlI	CCTC	6 cut(s)	83, 103, 149, 390, 431, 434
MspA1I	CMGCKG	1 cut(s)	383
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	32, 359
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	2 cut(s)	204, 346
PaeR7I	CTCGAG	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	294
PkrI	GCNGC	2 cut(s)	379, 382
PleI	GAGTC	2 cut(s)	72, 211
PpsI	GAGTC	2 cut(s)	72, 211
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	70
PspXI	VCTCGAGB	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	4 cut(s)	101, 146, 168, 174
RsaNI	GTAC	4 cut(s)	100, 145, 167, 173
SacII	CCGCGG	1 cut(s)	384
SatI	GCNGC	2 cut(s)	378, 381
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	2 cut(s)	72, 212
SetI	ASST	4 cut(s)	168, 172, 258, 445
Sfr274I	CTCGAG	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	384
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	2 cut(s)	381, 383
SspMI	CTAG	4 cut(s)	42, 218, 303, 481
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	3 cut(s)	141, 228, 292
TasI	AATT	1 cut(s)	466
TatI	WGTACW	3 cut(s)	99, 144, 172
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	294
TseFI	GTSAC	2 cut(s)	204, 346
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	2 cut(s)	204, 346
TspDTI	ATGAA	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	4 cut(s)	42, 218, 303, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.