Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

21128796 .. 21129570

Gene Structure 775 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGAGGCGAAAACGGAGTAAAACTACACGGGATGTGGGCTAGTACTTACTCTAAGAGAGTGGAACTCGCTCTCCGGCTTAAAGGCGTACCATACGAGTACATAGAAGAAGATTTGAGCAACAAGAGCCAGCAGCTCCTCCAGTACAATCCGGTTCACAAGAAGGTTCCCGTACTTGTCCACAATGGAAAACCGATCGTTGTTGAATCGTACGTCATCTTAGAGTACATTGATGAAACTTGGAACAATGCTCCTAAAATCCTGCCTGAAGATCCTTATGAACGAGCCAAAGTTCGATTCTGGGCCTCTTATATCCAGCAACAGGGCATGAGCCAGGTGGTAACAAGTGAAGGTGAAGCGCAAGAGAAAGCGCTCGAGGAAGTGTTTGCGAGGCTGGGAGTGTTTGAAGAAGGAATGAAGGAGCACCTTCGCGGAGGAGATCCGTTCACCAACGGTGAGAATCTGGGACTCCTGGACATACTGATGGTTGCAACATTTGGTCCTTACAAAGCCCATGAACAAGTCCTTGGTTTCAAAATGTTGGACCCAGATAGGAATCCGTTGCTGTTCTCATGGGTAGCTGCAATGAAGGAGCATCAACTGGTGACAGAATTAGACCCTCCTCATGACAAGCTTGTTCGGCTCCTTCAGTTTATCAAGCAGACGAGTCATGCTCGATCGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

229

Amino Acids

26.05

Weight (kDa)

5.86

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	7 - 79	4.1e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 81	1.4e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 80	5.6e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	432
AciI	CCGC	1 cut(s)	432
AclWI	GGATC	2 cut(s)	266, 434
AcuI	CTGAAG	2 cut(s)	288, 632
AfaI	GTAC	7 cut(s)	46, 90, 101, 146, 174, 212, 227
AfeI	AGCGCT	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	206, 407, 535
AjnI	CCWGG	2 cut(s)	333, 471
AjuI	GAANNNNNNNTTGG	4 cut(s)	281, 313, 510, 542
AloI	GAACNNNNNNTCC	2 cut(s)	57, 89
AluBI	AGCT	3 cut(s)	136, 581, 634
AluI	AGCT	3 cut(s)	136, 581, 634
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	266, 434
Ama87I	CYCGRG	1 cut(s)	374
Aor51HI	AGCGCT	1 cut(s)	372
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	133, 581
AspLEI	GCGC	2 cut(s)	361, 373
AspS9I	GGNCC	3 cut(s)	303, 500, 544
AsuHPI	GGTGA	4 cut(s)	365, 439, 467, 616
AvaI	CYCGRG	1 cut(s)	374
AvaII	GGWCC	2 cut(s)	500, 544
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	145, 568
BccI	CCATC	1 cut(s)	478
BciT130I	CCWGG	2 cut(s)	335, 473
BfaI	CTAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	374
BisI	GCNGC	2 cut(s)	134, 582
BlsI	GCNGC	2 cut(s)	135, 583
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	2 cut(s)	335, 473
Bme18I	GGWCC	2 cut(s)	500, 544
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	3 cut(s)	303, 500, 544
BmiI	GGNNCC	3 cut(s)	168, 546, 644
BmrFI	CCNGG	2 cut(s)	335, 473
BmsI	GCATC	1 cut(s)	604
BplI	GAGNNNNNCTC	3 cut(s)	51, 83, 658
BpmI	CTGGAG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	526
BsaWI	WCCGGW	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	142, 606
Bse3DI	GCAATG	1 cut(s)	591
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	2 cut(s)	335, 473
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	591
BseNI	ACTGG	2 cut(s)	142, 606
BseRI	GAGGAG	3 cut(s)	128, 450, 612
BseXI	GCAGC	2 cut(s)	145, 568
BseYI	CCCAGC	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	432
Bsh1285I	CGRYCG	2 cut(s)	198, 680
BshFI	GGCC	1 cut(s)	305
BsiEI	CGRYCG	2 cut(s)	198, 680
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	76, 152
BsiWI	CGTACG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	480
BsnI	GGCC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	4 cut(s)	195, 271, 439, 677
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	432
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	3 cut(s)	168, 546, 644
BspPI	GGATC	2 cut(s)	266, 434
BsrDI	GCAATG	1 cut(s)	591
BsrI	ACTGG	2 cut(s)	142, 606
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	4 cut(s)	195, 271, 439, 677
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	335, 473
Bst4CI	ACNGT	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	54, 220
BstF5I	GGATG	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	374
BstHHI	GCGC	2 cut(s)	361, 373
BstKTI	GATC	4 cut(s)	198, 274, 442, 680
BstMBI	GATC	4 cut(s)	195, 271, 439, 677
BstMCI	CGRYCG	2 cut(s)	198, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 640
BstNI	CCWGG	2 cut(s)	335, 473
BstSCI	CCNGG	2 cut(s)	333, 471
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	2 cut(s)	145, 568
BstX2I	RGATCY	2 cut(s)	271, 439
BstYI	RGATCY	2 cut(s)	271, 439
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	2 cut(s)	361, 373
Cfr13I	GGNCC	3 cut(s)	303, 500, 544
Csp6I	GTAC	7 cut(s)	45, 89, 100, 145, 173, 211, 226
CviAII	CATG	5 cut(s)	328, 515, 573, 626, 671
CviQI	GTAC	7 cut(s)	45, 89, 100, 145, 173, 211, 226
DdeI	CTNAG	2 cut(s)	54, 220
DpnI	GATC	4 cut(s)	197, 273, 441, 679
DpnII	GATC	4 cut(s)	195, 271, 439, 677
Eco130I	CCWWGG	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	500, 544
Eco47III	AGCGCT	1 cut(s)	372
Eco57I	CTGAAG	2 cut(s)	288, 632
Eco88I	CYCGRG	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	333, 471
EcoT14I	CCWWGG	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	526
FaeI	CATG	5 cut(s)	331, 518, 576, 629, 674
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	5 cut(s)	327, 514, 572, 625, 670
Fnu4HI	GCNGC	2 cut(s)	134, 582
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	134, 582
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	360, 372
GluI	GCNGC	2 cut(s)	134, 582
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	125
HaeII	RGCGCY	1 cut(s)	374
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	2 cut(s)	76, 152
HhaI	GCGC	2 cut(s)	361, 373
Hin1II	CATG	5 cut(s)	331, 518, 576, 629, 674
Hin6I	GCGC	2 cut(s)	359, 371
HinP1I	GCGC	2 cut(s)	359, 371
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	6 cut(s)	206, 297, 460, 468, 556, 667
HpaII	CCGG	2 cut(s)	76, 152
HphI	GGTGA	4 cut(s)	365, 439, 467, 616
Hpy166II	GTNNAC	3 cut(s)	157, 181, 447
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	3 cut(s)	157, 181, 447
HpyAV	CCTTC	7 cut(s)	157, 344, 404, 412, 437, 583, 656
HpyCH4III	ACNGT	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	2 cut(s)	491, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 640
HpyF3I	CTNAG	2 cut(s)	54, 220
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	331, 518, 576, 629, 674
HspAI	GCGC	2 cut(s)	359, 371
Kzo9I	GATC	4 cut(s)	195, 271, 439, 677
LmnI	GCTCC	5 cut(s)	141, 256, 421, 592, 648
Lsp1109I	GCAGC	2 cut(s)	145, 568
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	340, 604
MalI	GATC	4 cut(s)	197, 273, 441, 679
MboI	GATC	4 cut(s)	195, 271, 439, 677
MboII	GAAGA	4 cut(s)	119, 122, 281, 419
MflI	RGATCY	2 cut(s)	271, 439
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	1 cut(s)	611
MlyI	GAGTC	2 cut(s)	462, 676
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	7 cut(s)	149, 316, 370, 384, 428, 630, 633
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	482
MspI	CCGG	2 cut(s)	76, 152
MspR9I	CCNGG	2 cut(s)	335, 473
MvaI	CCWGG	2 cut(s)	335, 473
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	126, 640
NdeII	GATC	4 cut(s)	195, 271, 439, 677
NlaIII	CATG	5 cut(s)	331, 518, 576, 629, 674
NlaIV	GGNNCC	3 cut(s)	168, 546, 644
NmuCI	GTSAC	1 cut(s)	604
PaeR7I	CTCGAG	1 cut(s)	374
PagI	TCATGA	1 cut(s)	625
PfeI	GAWTC	4 cut(s)	206, 297, 460, 556
Pfl23II	CGTACG	1 cut(s)	210
PfoI	TCCNGGA	1 cut(s)	471
PkrI	GCNGC	2 cut(s)	135, 583
Ple19I	CGATCG	2 cut(s)	198, 680
PleI	GAGTC	2 cut(s)	462, 675
PpsI	GAGTC	2 cut(s)	462, 675
Psp6I	CCWGG	2 cut(s)	333, 471
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	333, 471
PspLI	CGTACG	1 cut(s)	210
PspN4I	GGNNCC	3 cut(s)	168, 546, 644
PspPI	GGNCC	3 cut(s)	303, 500, 544
PspXI	VCTCGAGB	1 cut(s)	374
PsuI	RGATCY	2 cut(s)	271, 439
PvuI	CGATCG	2 cut(s)	198, 680
RsaI	GTAC	7 cut(s)	46, 90, 101, 146, 174, 212, 227
RsaNI	GTAC	7 cut(s)	45, 89, 100, 145, 173, 211, 226
RseI	CAYNNNNRTG	1 cut(s)	482
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	134, 582
Sau3AI	GATC	4 cut(s)	195, 271, 439, 677
Sau96I	GGNCC	3 cut(s)	303, 500, 544
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	462, 676
ScrFI	CCNGG	2 cut(s)	335, 473
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	8 cut(s)	138, 168, 216, 339, 355, 429, 583, 636
SfaNI	GCATC	1 cut(s)	604
Sfr274I	CTCGAG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	500, 544
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	482
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	611
SsiI	CCGC	1 cut(s)	432
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	333, 471
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	455
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	3 cut(s)	295, 375, 676
TasI	AATT	1 cut(s)	611
TatI	WGTACW	4 cut(s)	44, 99, 144, 225
TfiI	GAWTC	4 cut(s)	206, 297, 460, 556
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	2 cut(s)	133, 581
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	5 cut(s)	249, 294, 431, 531, 602
TspGWI	ACGGA	3 cut(s)	30, 432, 549
VpaK11BI	GGWCC	2 cut(s)	500, 544
XhoI	CTCGAG	1 cut(s)	374
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.