Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

3105386 .. 3105754

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGCCGAATAGTGACAAGTCATGGAGAAGCACAAGAACAAGCAGTCAAGGATGCGTTTGAGAAACTGCGAGTGTTTGAAGAAGGAATGAAGGAGTATCTTCCAGGAGGTGCTTCTTTCGCTAATGGCGAAAATTTGGGACTCCTAGACATATTGATGGTTACAACATTCGGCCCTCACAAAGCTCATGAAGAAGTGTTTGGTATCAAACTGATGGACCCAGAGAGGTATCCATTACTGTTCTCATGGATCACAGCACTGAATGAGCATCCCTTGATGAAAGAAATACAGCCTCCTTATGACAAGCTTGTCGAGCTCCTTCAACATTTTAAACCAACAAATCAAGCTACAGGGACTGAATCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

122

Amino Acids

13.81

Weight (kDa)

5.28

Isoelectric Point (pI)

28.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	1 cut(s)	133
AgsI	TTSAA	2 cut(s)	80, 323
AjnI	CCWGG	1 cut(s)	103
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	4 cut(s)	185, 307, 316, 347
AluI	AGCT	4 cut(s)	185, 307, 316, 347
Alw21I	GWGCWC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	257
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	173, 217
AvaII	GGWCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BccI	CCATC	2 cut(s)	151, 208
BciT130I	CCWGG	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	240
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	348
BfuI	GTATCC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	105
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	173, 217
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	43, 277
BseBI	CCWGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	58, 268
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	257
BssMI	GATC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	58, 268
BstKTI	GATC	1 cut(s)	252
BstMBI	GATC	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 313
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	58, 268
BtsIMutI	CAGTG	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	356
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	173, 217
CviAII	CATG	3 cut(s)	23, 188, 246
CviJI	RGCY	7 cut(s)	6, 174, 185, 292, 307, 316, 347
CviKI_1	RGCY	7 cut(s)	6, 174, 185, 292, 307, 316, 347
DpnI	GATC	1 cut(s)	251
DpnII	GATC	1 cut(s)	249
DraI	TTTAAA	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	3 cut(s)	26, 191, 249
FaiI	YATR	5 cut(s)	24, 152, 189, 247, 300
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	22, 187, 245
FokI	GGATG	2 cut(s)	65, 255
FriOI	GRGCYC	1 cut(s)	318
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	26, 191, 249
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	141, 359
Hpy188III	TCNNGA	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	77, 85, 329
HpyCH4III	ACNGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 313
Hsp92II	CATG	3 cut(s)	26, 191, 249
Kzo9I	GATC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	4 cut(s)	90, 117, 234, 336
LweI	GCATC	2 cut(s)	43, 277
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	13, 160
MalI	GATC	1 cut(s)	251
MboI	GATC	1 cut(s)	249
MboII	GAAGA	3 cut(s)	92, 92, 203
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	101, 186, 219, 303
MseI	TTAA	2 cut(s)	330, 367
MslI	CAYNNNNRTG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	119, 313
NdeII	GATC	1 cut(s)	249
NlaIII	CATG	3 cut(s)	26, 191, 249
NlaIV	GGNNCC	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	13
PagI	TCATGA	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	359
PfoI	TCCNGGA	1 cut(s)	103
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	173, 217
PstNI	CAGNNNCTG	1 cut(s)	356
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	330, 367
Sau3AI	GATC	1 cut(s)	249
Sau96I	GGNCC	2 cut(s)	173, 217
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	6 cut(s)	112, 187, 230, 309, 318, 349
SfaNI	GCATC	2 cut(s)	43, 277
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	312
TasI	AATT	1 cut(s)	133
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	330, 367
Tru9I	TTAA	2 cut(s)	330, 367
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	104, 204, 293
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	217
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.