Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

2594919 .. 2597132

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG040900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAATCCAACTTTTGAGGCTAAGAATTCATTTAGGGCTCCTAGACATTGTAGGAAGTTCAGTGTTTTGTGCATTTTCAGCTGTAGAAGAATTGATTGGTGTAAAGATCATAGACCCAGAGAAGACTCCAGTGCTATTCTCTTGGATAACAGCTCTGAGAGAGCAACCTATAGTGATGGAGACAATCACTCCTCCTGAAAAGCTGTTGTTTGAGAGCATACTCAAACTGGTGACAAGTCATGGGGAAGCACAAGAAAAAGCAGCCGCGGAAGTGATTGAGAGGCAGGGAGTGTTTGAAGAAGGAATGAAGGAGTATTTTGCAGGAGGTGCTTCTTTCACTAATGAGAAGAATTGGGGGCTACTAGACATATTGATGGGTTCAACATTTGGCGCTTACGAAGTTCATGAAGAAGTGTATGGTTTCAAACTGATGGACCCGGATAAGAATCCATTACTGTTCTCATGGATTACAAGATTGAAGGAGCATCCATTGATGAAGGGATTACTGCCTCCTCATGACAAGCTTGTCGAGTTCCTTCAACTTATTAGACGAACAAGTCATGCTAGAGGGGCTGAATCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

195

Amino Acids

21.95

Weight (kDa)

5.42

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	527, 558
AccII	CGCG	1 cut(s)	269
AciI	CCGC	2 cut(s)	267, 269
AcsI	RAATTY	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	299, 384, 427, 481, 542
AjuI	GAANNNNNNNTTGG	2 cut(s)	81, 113
AluBI	AGCT	4 cut(s)	83, 155, 205, 526
AluI	AGCT	4 cut(s)	83, 155, 205, 526
Alw26I	GTCTC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	1 cut(s)	436
BanII	GRGCYC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	3 cut(s)	172, 370, 427
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	3 cut(s)	44, 365, 567
BfmI	CTRYAG	2 cut(s)	84, 171
BfoI	RGCGCY	1 cut(s)	396
BisI	GCNGC	2 cut(s)	264, 267
BlsI	GCNGC	2 cut(s)	265, 268
Bme1390I	CCNGG	1 cut(s)	440
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	41, 438
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	440
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	267
BsaXI	ACNNNNNCTCC	2 cut(s)	175, 205
Bse1I	ACTGG	2 cut(s)	131, 234
Bse8I	GATNNNNATC	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	131, 234
BseRI	GAGGAG	2 cut(s)	183, 504
BseXI	GCAGC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	108
BspACI	CCGC	2 cut(s)	267, 269
BspCNI	CTCAG	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	269
BspHI	TCATGA	2 cut(s)	406, 517
BspLI	GGNNCC	2 cut(s)	41, 438
BsrI	ACTGG	2 cut(s)	131, 234
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	459
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstDEI	CTNAG	2 cut(s)	23, 158
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	269
BstH2I	RGCGCY	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	395
BstKTI	GATC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	108
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 329, 572
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	2 cut(s)	84, 171
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	275
BstV2I	GAAGAC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	487
BtsIMutI	CAGTG	2 cut(s)	69, 138
CciI	TCATGA	2 cut(s)	406, 517
CfoI	GCGC	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	436
Cfr42I	CCGCGG	1 cut(s)	270
CviAII	CATG	5 cut(s)	242, 407, 465, 518, 563
CviJI	RGCY	9 cut(s)	22, 40, 83, 155, 205, 266, 361, 526, 575
CviKI_1	RGCY	9 cut(s)	22, 40, 83, 155, 205, 266, 361, 526, 575
DdeI	CTNAG	2 cut(s)	23, 158
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
DrdI	GACNNNNNNGTC	2 cut(s)	527, 558
DseDI	GACNNNNNNGTC	2 cut(s)	527, 558
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	42
FaeI	CATG	5 cut(s)	245, 410, 468, 521, 566
FatI	CATG	5 cut(s)	241, 406, 464, 517, 562
Fnu4HI	GCNGC	2 cut(s)	264, 267
FokI	GGATG	1 cut(s)	474
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	2 cut(s)	264, 267
FspBI	CTAG	3 cut(s)	44, 365, 567
GlaI	GCGC	1 cut(s)	394
GluI	GCNGC	2 cut(s)	264, 267
GsuI	CTGGAG	1 cut(s)	114
HaeII	RGCGCY	1 cut(s)	396
HapII	CCGG	1 cut(s)	440
HhaI	GCGC	1 cut(s)	395
Hin1II	CATG	5 cut(s)	245, 410, 468, 521, 566
Hin6I	GCGC	1 cut(s)	393
HinP1I	GCGC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	4 cut(s)	6, 127, 448, 578
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	3 cut(s)	197, 407, 518
HpyAV	CCTTC	5 cut(s)	296, 304, 475, 493, 548
HpyCH4III	ACNGT	1 cut(s)	459
HpyCH4V	TGCA	2 cut(s)	74, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 329, 572
HpyF3I	CTNAG	2 cut(s)	23, 158
Hsp92II	CATG	5 cut(s)	245, 410, 468, 521, 566
HspAI	GCGC	1 cut(s)	393
KspI	CCGCGG	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	45, 484
LpnPI	CCDG	7 cut(s)	132, 144, 210, 215, 272, 309, 453
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	1 cut(s)	496
MaeI	CTAG	3 cut(s)	44, 365, 567
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	5 cut(s)	101, 136, 311, 361, 422
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	4 cut(s)	27, 92, 352, 583
MlyI	GAGTC	1 cut(s)	121
MmeI	TCCRAC	1 cut(s)	34
MnlI	CCTC	7 cut(s)	12, 204, 276, 320, 522, 525, 563
MslI	CAYNNNNRTG	1 cut(s)	374
MspA1I	CMGCKG	2 cut(s)	83, 269
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	80, 329, 572
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	1 cut(s)	108
NlaIII	CATG	5 cut(s)	245, 410, 468, 521, 566
NlaIV	GGNNCC	2 cut(s)	41, 438
NmuCI	GTSAC	1 cut(s)	232
PagI	TCATGA	2 cut(s)	406, 517
PfeI	GAWTC	3 cut(s)	6, 448, 578
PkrI	GCNGC	2 cut(s)	265, 268
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PspN4I	GGNNCC	2 cut(s)	41, 438
PspPI	GGNCC	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	374
SacII	CCGCGG	1 cut(s)	270
SatI	GCNGC	2 cut(s)	264, 267
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	42
SetI	ASST	6 cut(s)	85, 157, 172, 207, 331, 528
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	2 cut(s)	84, 171
Sfr303I	CCGCGG	1 cut(s)	270
SgrBI	CCGCGG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	4 cut(s)	27, 92, 352, 583
SsiI	CCGC	2 cut(s)	267, 269
SspMI	CTAG	3 cut(s)	44, 365, 567
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	1 cut(s)	459
TaqI	TCGA	1 cut(s)	531
TasI	AATT	4 cut(s)	27, 92, 352, 583
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	6, 448, 578
TscAI	CASTG	2 cut(s)	69, 138
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	5 cut(s)	20, 323, 395, 423, 512
TspRI	CASTG	2 cut(s)	69, 138
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	1 cut(s)	27
XspI	CTAG	3 cut(s)	44, 365, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.