Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Reverse (-)

60966597 .. 60967547

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTCATGAGCGAAATGATCATCAGGTTGTAATCTGCGGATCATGGATTAGTTCATTTACTGCTAGGGTGAAGATAGCCCTAAAACTTAAGGGCATAGATTACGAGTATGTGGAGGAAGATATCACAAACAAGAGTCAGATGATGCTGAACTACAATCCCATCCATAAGAAGGTACCTATTCTTGTTCATCAAGGCAGGCCGATCGTTGAGTCACAAGTCATCCTGGAATATATCGATGAGAATTGGAGCCATGCCCCCAAACTGTTGCCCGAGGATCCTTATGAAAAAGCCAAAATCCGCTTCTGGGCTAAATTCTTTGATGAGAAGATAATACCGGTAATACAGGCGATTTTGAGGTCCAAGTCAGGGGAAGAGAGAGAGAATCTGATTCAAGAGTTGAGCGAAGTGATTCAGGTTTTTGAAGAAGGGATGAAGAGAGATTATGGAGAGAAACCACCCTTGTTCAATGGAGATTCGTTGGGGTTTCTCGGCATCGTGGTCAGCTCATATGTGTGCAGCTACAAGCCAATTCATGAGGCTTTCGCTACGATTCTTTTAGCCGAAAAGAACCCTGCATTTTTCTCATGGGTGAATGAGCTCCTAGAGCATCCTCTTATAAAGGAGACGCAGCCACCTCATGACAGACTGGTAGCTAGGTTCAAGTCTCTTCAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

226

Amino Acids

26.18

Weight (kDa)

5.93

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	14 - 82	3e-15	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	18 - 81	8.4e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	18 - 81	9.4e-13	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AciI	CCGC	2 cut(s)	39, 301
AclWI	GGATC	3 cut(s)	49, 272, 285
AcsI	RAATTY	1 cut(s)	314
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	3 cut(s)	172, 307, 369
AflII	CTTAAG	1 cut(s)	89
AgeI	ACCGGT	1 cut(s)	337
AgsI	TTSAA	5 cut(s)	395, 425, 469, 664, 674
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	2 cut(s)	287, 319
AluBI	AGCT	4 cut(s)	507, 522, 601, 656
AluI	AGCT	4 cut(s)	507, 522, 601, 656
Alw21I	GWGCWC	1 cut(s)	603
Alw26I	GTCTC	2 cut(s)	620, 672
AlwI	GGATC	3 cut(s)	49, 272, 285
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	200
ApeKI	GCWGC	2 cut(s)	519, 631
ApoI	RAATTY	1 cut(s)	314
AsiGI	ACCGGT	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	2 cut(s)	82, 604
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	603
BbvI	GCAGC	2 cut(s)	531, 643
BccI	CCATC	1 cut(s)	170
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	2 cut(s)	620, 672
BfaI	CTAG	3 cut(s)	66, 605, 657
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	520, 632
BlsI	GCNGC	2 cut(s)	521, 633
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	360
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	3 cut(s)	177, 251, 279
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	3 cut(s)	135, 504, 619
Bsa29I	ATCGAT	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 307, 369
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	4 cut(s)	162, 222, 438, 610
BseLI	CCNNNNNNNGG	3 cut(s)	172, 307, 369
BseNI	ACTGG	1 cut(s)	654
BseXI	GCAGC	2 cut(s)	531, 643
BsgI	GTGCAG	1 cut(s)	538
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	175
BshTI	ACCGGT	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	237
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	603
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	172, 307, 369
BsmAI	GTCTC	2 cut(s)	620, 672
BsmBI	CGTCTC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	202
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	603
Bsp143I	GATC	4 cut(s)	19, 41, 204, 277
BspACI	CCGC	2 cut(s)	39, 301
BspANI	GGCC	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	237
BspHI	TCATGA	3 cut(s)	7, 535, 640
BspLI	GGNNCC	3 cut(s)	177, 251, 279
BspPI	GGATC	3 cut(s)	49, 272, 285
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	654
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	19, 41, 204, 277
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	3 cut(s)	369, 431, 675
BstAFI	CTTAAG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	200
BstF5I	GGATG	4 cut(s)	162, 222, 438, 610
BstKTI	GATC	4 cut(s)	22, 44, 207, 280
BstMAI	GTCTC	2 cut(s)	620, 672
BstMBI	GATC	4 cut(s)	19, 41, 204, 277
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	531, 643
BstX2I	RGATCY	1 cut(s)	277
BstYI	RGATCY	1 cut(s)	277
Bsu15I	ATCGAT	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	202
BsuTUI	ATCGAT	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	162, 222, 438, 610
Cac8I	GCNNGC	1 cut(s)	200
CciI	TCATGA	3 cut(s)	7, 535, 640
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	360
ClaI	ATCGAT	1 cut(s)	237
CseI	GACGC	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	176
CspAI	ACCGGT	1 cut(s)	337
CviAII	CATG	6 cut(s)	8, 45, 254, 536, 588, 641
CviQI	GTAC	1 cut(s)	176
DpnI	GATC	4 cut(s)	21, 43, 206, 279
DpnII	GATC	4 cut(s)	19, 41, 204, 277
Eam1104I	CTCTTC	3 cut(s)	369, 431, 675
EarI	CTCTTC	3 cut(s)	369, 431, 675
Ecl136II	GAGCTC	1 cut(s)	601
Eco24I	GRGCYC	1 cut(s)	603
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	601
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	603
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
FatI	CATG	6 cut(s)	7, 44, 253, 535, 587, 640
FauNDI	CATATG	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	520, 632
FokI	GGATG	4 cut(s)	149, 209, 445, 597
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	2 cut(s)	520, 632
FspBI	CTAG	3 cut(s)	66, 605, 657
GluI	GCNGC	2 cut(s)	520, 632
HaeIII	GGCC	1 cut(s)	202
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	637
Hin1II	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
HinfI	GANTC	7 cut(s)	136, 212, 385, 391, 412, 476, 553
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	82, 604
Hpy188I	TCNGA	2 cut(s)	141, 390
Hpy188III	TCNNGA	4 cut(s)	8, 395, 536, 641
HpyAV	CCTTC	2 cut(s)	166, 422
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	519, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
Hsp92II	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
KpnI	GGTACC	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	4 cut(s)	19, 41, 204, 277
LmnI	GCTCC	2 cut(s)	249, 606
Lsp1109I	GCAGC	2 cut(s)	531, 643
LweI	GCATC	3 cut(s)	135, 504, 619
MaeI	CTAG	3 cut(s)	66, 605, 657
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	4 cut(s)	21, 43, 206, 279
MboI	GATC	4 cut(s)	19, 41, 204, 277
MboII	GAAGA	7 cut(s)	85, 131, 340, 386, 437, 448, 662
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	603
MluCI	AATT	3 cut(s)	244, 314, 531
MlyI	GAGTC	2 cut(s)	145, 221
MnlI	CCTC	6 cut(s)	109, 268, 351, 532, 624, 648
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	514
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	607
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	4 cut(s)	19, 41, 204, 277
NlaIII	CATG	6 cut(s)	11, 48, 257, 539, 591, 644
NlaIV	GGNNCC	3 cut(s)	177, 251, 279
NmeAIII	GCCGAG	1 cut(s)	471
NmuCI	GTSAC	1 cut(s)	213
PagI	TCATGA	3 cut(s)	7, 535, 640
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	385, 391, 412, 476, 553
PfoI	TCCNGGA	1 cut(s)	225
PinAI	ACCGGT	1 cut(s)	337
PkrI	GCNGC	2 cut(s)	521, 633
Ple19I	CGATCG	1 cut(s)	207
PleI	GAGTC	2 cut(s)	144, 220
PpsI	GAGTC	2 cut(s)	144, 220
PsiI	TTATAA	1 cut(s)	620
Psp124BI	GAGCTC	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	3 cut(s)	177, 251, 279
PspPI	GGNCC	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	277
PvuI	CGATCG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	2 cut(s)	520, 632
Sau3AI	GATC	4 cut(s)	19, 41, 204, 277
Sau96I	GGNCC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	145, 221
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	603
SfaNI	GCATC	3 cut(s)	135, 504, 619
SinI	GGWCC	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	244, 314, 531
SsiI	CCGC	2 cut(s)	39, 301
SspMI	CTAG	3 cut(s)	66, 605, 657
SstI	GAGCTC	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	244, 314, 531
TfiI	GAWTC	5 cut(s)	385, 391, 412, 476, 553
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	2 cut(s)	519, 631
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	5 cut(s)	45, 179, 300, 449, 524
Vha464I	CTTAAG	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	360
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	3 cut(s)	66, 605, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.