Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

28046954 .. 28048070

Gene Structure 1117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G274400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCACCAATTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGGAGAATGGAGCACAAGCAATCTGAGGTTGTGCTCTTTGGGACATGGGCTAGTTCTTTCAGTGGTAGAGTCAAGATAGCCCTGAAACTTAAGGGCATCCAATATGAGTATGTTGAAGAAGATTTAGTAAACAAGAGCCAAATGCTGCTCAGCTACAATCCTGTCCACAAACAGGTACCTGTTCTTGTACACAGAGGCAAGCCAATCGCAGAATCACGCGTCATCCTCGAATACATTGATGAGAACTGGAGCAAAACCCCCAATCTGCTGCCCAAAGATCCATATGAAAGAGCCAAAATTCGCTTTTGGGCAAAATATTATGATGAGAAGATCATACCAGGAATATACAGTATTATAAGATCCACAGGGAAATATAGAGAGAAGGCCATCGAAGACTTGAGCGAATTGGTTAAGGTCTTTGAAGAAGGGATGAAGAGGGATTTTCAAGAGGATCCCCTCTTCTTCATTGATGGTTCCTTGAGCTTTCTGGGTATTGTGGTGAGCTCATATGCTTGCACCTATGAGGCTTTTCATGAGGCTGTCACTACCGTTCTTATACCCGAAAAGAACCCTGCATTCTTTTCATGGGTGCATGATCTCAAAGGCCATCCTCTGATAAAGGAGACTCTCCCACCTCATGACAAACTGGTCGCCAGGCTGAAGCATCTTCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

253

Amino Acids

29.81

Weight (kDa)

7.82

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	437
AasI	GACNNNNNNGTC	1 cut(s)	728
Acc65I	GGTACC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	256
AccII	CGCG	1 cut(s)	300
AclWI	GGATC	4 cut(s)	353, 435, 527, 540
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	2 cut(s)	258, 270
AfiI	CCNNNNNNNGG	1 cut(s)	253
AflII	CTTAAG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	4 cut(s)	197, 503, 527, 752
AjnI	CCWGG	2 cut(s)	418, 734
AluBI	AGCT	4 cut(s)	234, 564, 585, 755
AluI	AGCT	4 cut(s)	234, 564, 585, 755
Alw21I	GWGCWC	3 cut(s)	96, 117, 587
Alw26I	GTCTC	1 cut(s)	698
AlwI	GGATC	4 cut(s)	353, 435, 527, 540
AoxI	GGCC	2 cut(s)	465, 685
ApeKI	GCWGC	2 cut(s)	226, 349
ApoI	RAATTY	1 cut(s)	378
Asp718I	GGTACC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	592
BamHI	GGATCC	1 cut(s)	532
BanI	GGYRCC	1 cut(s)	256
BanII	GRGCYC	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	3 cut(s)	96, 117, 587
BbvI	GCAGC	2 cut(s)	213, 336
BccI	CCATC	3 cut(s)	476, 545, 696
BcgI	CGANNNNNNTGC	2 cut(s)	268, 302
BciT130I	CCWGG	2 cut(s)	420, 736
BcoDI	GTCTC	1 cut(s)	698
BfaI	CTAG	1 cut(s)	132
BfrI	CTTAAG	1 cut(s)	170
BisI	GCNGC	2 cut(s)	227, 350
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	228, 351
Bme1390I	CCNGG	2 cut(s)	420, 736
BmiI	GGNNCC	3 cut(s)	258, 534, 556
BmrFI	CCNGG	2 cut(s)	420, 736
BmsI	GCATC	2 cut(s)	186, 754
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	2 cut(s)	499, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse1I	ACTGG	2 cut(s)	332, 732
BseBI	CCWGG	2 cut(s)	420, 736
BseGI	GGATG	4 cut(s)	177, 303, 516, 688
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	96, 244
BseNI	ACTGG	2 cut(s)	332, 732
BseRI	GAGGAG	2 cut(s)	90, 97
BseXI	GCAGC	2 cut(s)	213, 336
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	467, 687
BshNI	GGYRCC	1 cut(s)	256
BsiHKAI	GWGCWC	3 cut(s)	96, 117, 587
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	1 cut(s)	698
BsmFI	GGGAC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	467, 687
Bsp1286I	GDGCHC	3 cut(s)	96, 117, 587
Bsp1407I	TGTACA	1 cut(s)	268
Bsp143I	GATC	5 cut(s)	358, 411, 440, 532, 676
Bsp1720I	GCTNAGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	467, 687
BspCNI	CTCAG	2 cut(s)	97, 243
BspFNI	CGCG	1 cut(s)	300
BspHI	TCATGA	2 cut(s)	613, 718
BspLI	GGNNCC	3 cut(s)	258, 534, 556
BspPI	GGATC	4 cut(s)	353, 435, 527, 540
BspT107I	GGYRCC	1 cut(s)	256
BspTI	CTTAAG	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	332, 732
BssMI	GATC	5 cut(s)	358, 411, 440, 532, 676
Bst2UI	CCWGG	2 cut(s)	420, 736
Bst4CI	ACNGT	2 cut(s)	431, 631
Bst6I	CTCTTC	2 cut(s)	509, 545
BstAFI	CTTAAG	1 cut(s)	170
BstAUI	TGTACA	1 cut(s)	268
BstC8I	GCNNGC	2 cut(s)	281, 595
BstDEI	CTNAG	2 cut(s)	105, 230
BstF5I	GGATG	4 cut(s)	177, 303, 516, 688
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	5 cut(s)	361, 414, 443, 535, 679
BstMAI	GTCTC	1 cut(s)	698
BstMBI	GATC	5 cut(s)	358, 411, 440, 532, 676
BstNI	CCWGG	2 cut(s)	420, 736
BstSCI	CCNGG	2 cut(s)	418, 734
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	2 cut(s)	213, 336
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	3 cut(s)	358, 440, 532
BstYI	RGATCY	3 cut(s)	358, 440, 532
BsuRI	GGCC	2 cut(s)	467, 687
BtsCI	GGATG	4 cut(s)	177, 303, 516, 688
BtsIMutI	CAGTG	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	281, 595
CciI	TCATGA	2 cut(s)	613, 718
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	257, 269
CviAII	CATG	5 cut(s)	126, 614, 666, 674, 719
CviQI	GTAC	2 cut(s)	257, 269
DdeI	CTNAG	2 cut(s)	105, 230
DpnI	GATC	5 cut(s)	360, 413, 442, 534, 678
DpnII	GATC	5 cut(s)	358, 411, 440, 532, 676
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
Eam1104I	CTCTTC	2 cut(s)	509, 545
EarI	CTCTTC	2 cut(s)	509, 545
Ecl136II	GAGCTC	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	587
Eco53kI	GAGCTC	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	418, 734
EcoT38I	GRGCYC	1 cut(s)	587
FaeI	CATG	5 cut(s)	129, 617, 669, 677, 722
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	5 cut(s)	125, 613, 665, 673, 718
FauNDI	CATATG	2 cut(s)	364, 589
Fnu4HI	GCNGC	2 cut(s)	227, 350
FokI	GGATG	4 cut(s)	164, 290, 523, 675
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	2 cut(s)	227, 350
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	2 cut(s)	227, 350
GsuI	CTGGAG	1 cut(s)	349
HaeIII	GGCC	2 cut(s)	467, 687
HgaI	GACGC	1 cut(s)	289
Hin1II	CATG	5 cut(s)	129, 617, 669, 677, 722
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	3 cut(s)	150, 293, 706
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	3 cut(s)	211, 247, 271
Hpy188I	TCNGA	2 cut(s)	106, 696
Hpy188III	TCNNGA	4 cut(s)	154, 527, 614, 719
Hpy8I	GTNNAC	3 cut(s)	211, 247, 271
HpyAV	CCTTC	2 cut(s)	457, 500
HpyCH4III	ACNGT	2 cut(s)	431, 631
HpyCH4V	TGCA	4 cut(s)	4, 597, 656, 673
HpyF3I	CTNAG	2 cut(s)	105, 230
Hsp92II	CATG	5 cut(s)	129, 617, 669, 677, 722
KpnI	GGTACC	1 cut(s)	260
Kzo9I	GATC	5 cut(s)	358, 411, 440, 532, 676
LmnI	GCTCC	2 cut(s)	91, 330
Lsp1109I	GCAGC	2 cut(s)	213, 336
LweI	GCATC	2 cut(s)	186, 754
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	1 cut(s)	622
MalI	GATC	5 cut(s)	360, 413, 442, 534, 678
MboI	GATC	5 cut(s)	358, 411, 440, 532, 676
MboII	GAAGA	9 cut(s)	209, 212, 421, 485, 515, 526, 532, 535, 740
MflI	RGATCY	3 cut(s)	358, 440, 532
MhlI	GDGCHC	3 cut(s)	96, 117, 587
MluCI	AATT	3 cut(s)	8, 378, 485
MluI	ACGCGT	1 cut(s)	298
MlyI	GAGTC	2 cut(s)	159, 700
MseI	TTAA	2 cut(s)	171, 492
MspCI	CTTAAG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	420, 736
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	420, 736
MvnI	CGCG	1 cut(s)	300
NdeI	CATATG	2 cut(s)	364, 589
NdeII	GATC	5 cut(s)	358, 411, 440, 532, 676
NlaIII	CATG	5 cut(s)	129, 617, 669, 677, 722
NlaIV	GGNNCC	3 cut(s)	258, 534, 556
NmuCI	GTSAC	1 cut(s)	622
PagI	TCATGA	2 cut(s)	613, 718
PctI	GAATGC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	228, 351
PleI	GAGTC	2 cut(s)	158, 700
PpsI	GAGTC	2 cut(s)	158, 700
PsiI	TTATAA	1 cut(s)	437
Psp124BI	GAGCTC	1 cut(s)	587
Psp6I	CCWGG	2 cut(s)	418, 734
PspGI	CCWGG	2 cut(s)	418, 734
PspN4I	GGNNCC	3 cut(s)	258, 534, 556
PsuI	RGATCY	3 cut(s)	358, 440, 532
RsaI	GTAC	2 cut(s)	258, 270
RsaNI	GTAC	2 cut(s)	257, 269
SacI	GAGCTC	1 cut(s)	587
SaqAI	TTAA	2 cut(s)	171, 492
SatI	GCNGC	2 cut(s)	227, 350
Sau3AI	GATC	5 cut(s)	358, 411, 440, 532, 676
SchI	GAGTC	2 cut(s)	159, 700
ScrFI	CCNGG	2 cut(s)	420, 736
SduI	GDGCHC	3 cut(s)	96, 117, 587
SfaNI	GCATC	2 cut(s)	186, 754
SmlI	CTYRAG	3 cut(s)	170, 478, 559
SmoI	CTYRAG	3 cut(s)	170, 478, 559
Sse9I	AATT	3 cut(s)	8, 378, 485
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	132
SstI	GAGCTC	1 cut(s)	587
StyD4I	CCNGG	2 cut(s)	418, 734
TaaI	ACNGT	2 cut(s)	431, 631
TaqI	TCGA	2 cut(s)	309, 471
TasI	AATT	3 cut(s)	8, 378, 485
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	171, 492
Tru9I	TTAA	2 cut(s)	171, 492
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	2 cut(s)	226, 349
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	5 cut(s)	381, 527, 535, 602, 654
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	170
XapI	RAATTY	1 cut(s)	378
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.