Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

2918730 .. 2919366

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16169

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAGAAAATTCATCACTCACAAATATCTCTTCCTTTCCATTTCATATTTTGACTGTGCTTACTCTAAGAGAGTGGAACTGGCCCTCAGACTCAAAAGCATACCTTATGAGTACATGGAAGAGGATTTGAGCAACAAGAGCCAGTTGCTCCTCGAGTACAATCCAGTTCACAAGAAGGTACCTGTACTCATCCACAATGGAAAACCCATCTCCGAGTCACACATCATCCTAGAATACATCGAAGAAACTTGGAAGACTGCTCCTAAGCTCCTGCCTGAAGATCCTTACGAAAGAGCCAAAGTTCGATTCTGGGGTAGTTTTATCCAGCAACAGTTGTTTGAGAGCATACTCAAACTGGTGACAAGACATGGGGAAGCACAAGAAAAAGCAGCCACGGAAGTGATTGAGAGGCAGGGAGTGTTTGAAGAAGGAATGAAGAAGTATTTTGGAGGAGGTGCTTCTTTCACTAATGAGAAGAATTGGGGGCTACTAGACATATTGATGGGTTCAACATTTGGCGCTTACGAAGTTCATGAAGAAACTTCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

183

Amino Acids

21.32

Weight (kDa)

6.1

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	16 - 82	4.4e-15	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	16 - 83	2e-14	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	19 - 83	2.4e-14	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	178
AccB1I	GGYRCC	1 cut(s)	178
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	8
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	4 cut(s)	113, 158, 180, 186
AgsI	TTSAA	3 cut(s)	425, 510, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	290, 322
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	8
Asp718I	GGTACC	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	521
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	152
BanI	GGYRCC	1 cut(s)	178
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	215, 496
BfaI	CTAG	2 cut(s)	230, 491
BfoI	RGCGCY	1 cut(s)	522
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	393
Bse1I	ACTGG	4 cut(s)	84, 142, 164, 360
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	2 cut(s)	189, 225
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	4 cut(s)	84, 142, 164, 360
BseRI	GAGGAG	2 cut(s)	140, 465
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	83
BshNI	GGYRCC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	152
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	280
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	84, 142, 164, 360
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	56, 333
Bst6I	CTCTTC	2 cut(s)	35, 114
BstDEI	CTNAG	3 cut(s)	66, 86, 264
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	2 cut(s)	189, 225
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	1 cut(s)	521
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	2 cut(s)	189, 225
CciI	TCATGA	1 cut(s)	532
CfoI	GCGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	4 cut(s)	112, 157, 179, 185
CviAII	CATG	3 cut(s)	115, 368, 533
CviJI	RGCY	6 cut(s)	83, 141, 268, 296, 392, 487
CviKI_1	RGCY	6 cut(s)	83, 141, 268, 296, 392, 487
CviQI	GTAC	4 cut(s)	112, 157, 179, 185
DdeI	CTNAG	3 cut(s)	66, 86, 264
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
Eam1104I	CTCTTC	2 cut(s)	35, 114
EarI	CTCTTC	2 cut(s)	35, 114
Eco57I	CTGAAG	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	152
FaeI	CATG	3 cut(s)	118, 371, 536
FaiI	YATR	8 cut(s)	46, 101, 108, 116, 347, 369, 497, 534
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	3 cut(s)	114, 367, 532
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	176, 212
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	2 cut(s)	230, 491
GlaI	GCGC	1 cut(s)	520
GluI	GCNGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	118, 371, 536
Hin6I	GCGC	1 cut(s)	519
HinP1I	GCGC	1 cut(s)	519
HinfI	GANTC	3 cut(s)	90, 215, 306
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	2 cut(s)	89, 214
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	169, 422
HpyCH4III	ACNGT	2 cut(s)	56, 333
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	3 cut(s)	66, 86, 264
Hsp92II	CATG	3 cut(s)	118, 371, 536
HspAI	GCGC	1 cut(s)	519
KpnI	GGTACC	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	3 cut(s)	153, 265, 273
Lsp1109I	GCAGC	1 cut(s)	401
MaeI	CTAG	2 cut(s)	230, 491
MaeIII	GTNAC	2 cut(s)	216, 358
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	9 cut(s)	22, 131, 254, 265, 290, 437, 448, 487, 548
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	2 cut(s)	8, 478
MlyI	GAGTC	2 cut(s)	84, 224
MnlI	CCTC	6 cut(s)	95, 115, 161, 402, 443, 446
MslI	CAYNNNNRTG	2 cut(s)	398, 500
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	3 cut(s)	118, 371, 536
NlaIV	GGNNCC	1 cut(s)	180
NmuCI	GTSAC	2 cut(s)	216, 358
OliI	CACNNNNGTG	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	152
PagI	TCATGA	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	84, 223
PpsI	GAGTC	2 cut(s)	84, 223
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	82
PspXI	VCTCGAGB	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	4 cut(s)	113, 158, 180, 186
RsaNI	GTAC	4 cut(s)	112, 157, 179, 185
RseI	CAYNNNNRTG	2 cut(s)	398, 500
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	84, 224
SetI	ASST	5 cut(s)	106, 180, 184, 270, 457
Sfr274I	CTCGAG	1 cut(s)	152
SlaI	CTCGAG	1 cut(s)	152
SmiMI	CAYNNNNRTG	2 cut(s)	398, 500
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	8, 478
SspMI	CTAG	2 cut(s)	230, 491
TaaI	ACNGT	2 cut(s)	56, 333
TaqI	TCGA	3 cut(s)	153, 240, 304
TasI	AATT	2 cut(s)	8, 478
TatI	WGTACW	3 cut(s)	111, 156, 184
TfiI	GAWTC	1 cut(s)	306
TseFI	GTSAC	2 cut(s)	216, 358
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	216, 358
TspDTI	ATGAA	4 cut(s)	33, 449, 521, 549
TspGWI	ACGGA	1 cut(s)	410
XapI	RAATTY	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	152
XspI	CTAG	2 cut(s)	230, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.