Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

57319749 .. 57320347

Gene Structure 599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0440200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGAGGAGCGCGAGAAGCAAGTAAGAGAGGAGGTGCAGCGGAAAGAGAAGGAGAAACATGGCGTGATTTCAGATATGAAGCCACTTAACCGTGAGGCATACGGCGGTGGATTGTACGCTAACGAGAAACATTATTCCGGCGAGGCCGCGGCGGAGGAAAAGCCACGCGTGGGGAGGGCGAGCGACACCCAAAGCGCCGATGGACCTATTGAACCTAGCCCGCCACCCAAGCATAAACCACCACCGTCCACGGGCGACCGAGACCTCGATATAACTGGCCAGACCTATATTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

5.41

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	15, 152, 171
AciI	CCGC	6 cut(s)	43, 108, 150, 152, 155, 224
AcoI	YGGCCR	1 cut(s)	280
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	173, 254
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	215
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	2 cut(s)	147, 280
ApeKI	GCWGC	1 cut(s)	40
AspLEI	GCGC	2 cut(s)	15, 200
AspS9I	GGNCC	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	197
BceAI	ACGGC	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	201
BisI	GCNGC	3 cut(s)	41, 150, 153
BlsI	GCNGC	3 cut(s)	42, 151, 154
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	150, 252
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 254
Bse1I	ACTGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	150, 252
BseLI	CCNNNNNNNGG	2 cut(s)	173, 254
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	23, 47
BseXI	GCAGC	1 cut(s)	52
BsgI	GTGCAG	1 cut(s)	59
Bsh1236I	CGCG	3 cut(s)	15, 152, 171
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	2 cut(s)	149, 282
BsiEI	CGRYCG	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	173, 254
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	149, 282
Bso31I	GGTCTC	1 cut(s)	258
BspACI	CCGC	6 cut(s)	43, 108, 150, 152, 155, 224
BspANI	GGCC	2 cut(s)	149, 282
BspFNI	CGCG	3 cut(s)	15, 152, 171
BspTNI	GGTCTC	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	150, 252
Bst4CI	ACNGT	2 cut(s)	95, 249
BstC8I	GCNNGC	2 cut(s)	184, 224
BstDSI	CCRYGG	2 cut(s)	150, 252
BstFNI	CGCG	3 cut(s)	15, 152, 171
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	2 cut(s)	15, 200
BstMAI	GTCTC	1 cut(s)	258
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 232
BstUI	CGCG	3 cut(s)	15, 152, 171
BstV1I	GCAGC	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	149, 282
BtgI	CCRYGG	2 cut(s)	150, 252
Cac8I	GCNNGC	2 cut(s)	184, 224
CfoI	GCGC	2 cut(s)	15, 200
Cfr13I	GGNCC	1 cut(s)	206
Cfr42I	CCGCGG	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	5 cut(s)	85, 149, 166, 222, 282
CviKI_1	RGCY	5 cut(s)	85, 149, 166, 222, 282
CviQI	GTAC	1 cut(s)	118
EaeI	YGGCCR	1 cut(s)	280
EciI	GGCGGA	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	206
FaeI	CATG	1 cut(s)	65
FaiI	YATR	6 cut(s)	63, 80, 103, 237, 275, 291
FatI	CATG	1 cut(s)	61
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	41, 150, 153
Fsp4HI	GCNGC	3 cut(s)	41, 150, 153
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	2 cut(s)	14, 199
GluI	GCNGC	3 cut(s)	41, 150, 153
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	149, 282
HapII	CCGG	1 cut(s)	141
HhaI	GCGC	2 cut(s)	15, 200
Hin1II	CATG	1 cut(s)	65
Hin6I	GCGC	2 cut(s)	13, 198
HinP1I	GCGC	2 cut(s)	13, 198
HpaII	CCGG	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	1 cut(s)	76
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	95, 249
HpyCH4V	TGCA	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 232
Hsp92II	CATG	1 cut(s)	65
HspAI	GCGC	2 cut(s)	13, 198
KspI	CCGCGG	1 cut(s)	153
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	154, 264, 296
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	1 cut(s)	219
MboII	GAAGA	1 cut(s)	17
MlsI	TGGCCA	1 cut(s)	282
MluI	ACGCGT	1 cut(s)	169
MluNI	TGGCCA	1 cut(s)	282
MnlI	CCTC	7 cut(s)	25, 28, 91, 139, 151, 171, 278
Mox20I	TGGCCA	1 cut(s)	282
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	43, 152
MspI	CCGG	1 cut(s)	141
MvnI	CGCG	3 cut(s)	15, 152, 171
MwoI	GCNNNNNNNGC	2 cut(s)	19, 232
NlaIII	CATG	1 cut(s)	65
PkrI	GCNGC	3 cut(s)	42, 151, 154
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SacII	CCGCGG	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	41, 150, 153
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	5 cut(s)	39, 211, 220, 270, 290
Sfr303I	CCGCGG	1 cut(s)	153
SgrBI	CCGCGG	1 cut(s)	153
SinI	GGWCC	1 cut(s)	206
SsiI	CCGC	6 cut(s)	43, 108, 150, 152, 155, 224
SspMI	CTAG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	95, 249
TaqI	TCGA	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	276
TauI	GCSGC	2 cut(s)	152, 155
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseI	GCWGC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	206
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.