Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

2795242 .. 2796013

Gene Structure 772 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G003470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAAGGGGAGAGCAAAGTAAAACTACACGGAATGTGGGCTAGTACTTACTCCAAGAGAGTGGAACTGGCCCTCAAACTCAAAGGCATACCTTATGAGTACATAGAAGAAGATTTGAGAAACAAGAGCCAATTGCTTCTCAAATACAATCCAGTTCACAAAAAGATTCCTGTACTCGTCCACAATGGAAAACCTATAGCCGAGTCGTACATCATCCTAGAATACATTGACGAAACTTGGAAGAGTGCTCCTAAGCTGTTTCCTGAAGATCCTTATGAAAGAGCCAGAATTCGATTCTGGGCTAGCTTTATCCAGCAACAGTTGTTTGAAAGCATGAGCCGAATAGTGACAAGTCATGGAGAAGCACAAGAACAAGCAGTCAAGGATGCGTTTGAGAAACTGCGAGTGTTTGAAGAAGGAATGAAGGAGTATCTTCCAGGAGGTGCTTCTTTCACTAATGGCGAGAATTTGGGACTCCTAGACATATTGATGGTTACAACATTCGGCCCTCACAAAGCTCATGAAGAAGTGTTTGGAATCAAACTGATGGACCCAGAGAGGTATCCATTACTGTTCTCATGGATCACAGCACTGAATGAGCATCCCTTGATGAAAGAAATACAGCCTCCTTATGAAAAGCTTGTCGAGCTCCTTCAACATTTTAAACCAACAAATCAAGCTACAGGGACTGAATCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

233

Amino Acids

26.99

Weight (kDa)

6.02

Isoelectric Point (pI)

29.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	1e-18	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	3.7e-16	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	3.5e-15	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	263, 590
AcsI	RAATTY	2 cut(s)	288, 466
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	4 cut(s)	46, 101, 174, 209
AgsI	TTSAA	3 cut(s)	329, 413, 656
AjnI	CCWGG	1 cut(s)	436
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AluBI	AGCT	6 cut(s)	256, 306, 518, 640, 649, 680
AluI	AGCT	6 cut(s)	256, 306, 518, 640, 649, 680
Alw21I	GWGCWC	2 cut(s)	250, 651
AlwI	GGATC	2 cut(s)	263, 590
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	2 cut(s)	69, 505
ApoI	RAATTY	2 cut(s)	288, 466
AspS9I	GGNCC	3 cut(s)	70, 506, 550
AsuNHI	GCTAGC	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	250, 651
BccI	CCATC	2 cut(s)	484, 541
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	573
BfaI	CTAG	4 cut(s)	42, 218, 303, 479
BfmI	CTRYAG	2 cut(s)	195, 681
BfuI	GTATCC	1 cut(s)	573
BmcAI	AGTACT	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	70, 506, 550
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	2 cut(s)	376, 610
BmtI	GCTAGC	1 cut(s)	306
Bpu10I	CCTNAGC	1 cut(s)	252
Bse1I	ACTGG	2 cut(s)	72, 152
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	213, 391, 601
BseNI	ACTGG	2 cut(s)	72, 152
BshFI	GGCC	2 cut(s)	71, 507
BsiHKAI	GWGCWC	2 cut(s)	250, 651
BslFI	GGGAC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	71, 507
Bsp1286I	GDGCHC	2 cut(s)	250, 651
Bsp143I	GATC	2 cut(s)	268, 582
BspANI	GGCC	2 cut(s)	71, 507
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	552
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	263, 590
BsrI	ACTGG	2 cut(s)	72, 152
BssMI	GATC	2 cut(s)	268, 582
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	321, 573
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	213, 391, 601
BstKTI	GATC	2 cut(s)	271, 585
BstMBI	GATC	2 cut(s)	268, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	2 cut(s)	195, 681
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	573
BsuRI	GGCC	2 cut(s)	71, 507
BtsCI	GGATG	3 cut(s)	213, 391, 601
BtsIMutI	CAGTG	1 cut(s)	590
Cac8I	GCNNGC	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	70, 506, 550
Csp6I	GTAC	4 cut(s)	45, 100, 173, 208
CviAII	CATG	4 cut(s)	334, 356, 521, 579
CviQI	GTAC	4 cut(s)	45, 100, 173, 208
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	270, 584
DpnII	GATC	2 cut(s)	268, 582
DraI	TTTAAA	1 cut(s)	664
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	649
Eco24I	GRGCYC	1 cut(s)	651
Eco47I	GGWCC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	649
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	649
EcoRI	GAATTC	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	651
FaeI	CATG	4 cut(s)	337, 359, 524, 582
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	4 cut(s)	333, 355, 520, 578
FokI	GGATG	3 cut(s)	200, 398, 588
FriOI	GRGCYC	1 cut(s)	651
FspBI	CTAG	4 cut(s)	42, 218, 303, 479
HaeIII	GGCC	2 cut(s)	71, 507
Hin1II	CATG	4 cut(s)	337, 359, 524, 582
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	6 cut(s)	166, 203, 294, 474, 537, 692
Hpy166II	GTNNAC	2 cut(s)	157, 181
Hpy188III	TCNNGA	2 cut(s)	263, 521
Hpy8I	GTNNAC	2 cut(s)	157, 181
HpyAV	CCTTC	3 cut(s)	410, 418, 662
HpyCH4III	ACNGT	2 cut(s)	321, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	337, 359, 524, 582
Kzo9I	GATC	2 cut(s)	268, 582
LmnI	GCTCC	2 cut(s)	253, 654
LweI	GCATC	2 cut(s)	376, 610
MaeI	CTAG	4 cut(s)	42, 218, 303, 479
MaeIII	GTNAC	2 cut(s)	346, 493
MalI	GATC	2 cut(s)	270, 584
MboI	GATC	2 cut(s)	268, 582
MboII	GAAGA	7 cut(s)	119, 122, 253, 278, 425, 425, 536
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	2 cut(s)	250, 651
MluCI	AATT	3 cut(s)	131, 288, 466
MlyI	GAGTC	2 cut(s)	212, 468
MnlI	CCTC	5 cut(s)	83, 434, 519, 552, 636
MseI	TTAA	2 cut(s)	663, 700
MslI	CAYNNNNRTG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	438
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	646
NdeII	GATC	2 cut(s)	268, 582
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	337, 359, 524, 582
NlaIV	GGNNCC	1 cut(s)	552
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	520
PfeI	GAWTC	4 cut(s)	166, 294, 537, 692
PfoI	TCCNGGA	1 cut(s)	436
PleI	GAGTC	2 cut(s)	211, 468
PpsI	GAGTC	2 cut(s)	211, 468
Psp124BI	GAGCTC	1 cut(s)	651
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	1 cut(s)	552
PspPI	GGNCC	3 cut(s)	70, 506, 550
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	4 cut(s)	46, 101, 174, 209
RsaNI	GTAC	4 cut(s)	45, 100, 173, 208
RseI	CAYNNNNRTG	1 cut(s)	488
SacI	GAGCTC	1 cut(s)	651
SaqAI	TTAA	2 cut(s)	663, 700
Sau3AI	GATC	2 cut(s)	268, 582
Sau96I	GGNCC	3 cut(s)	70, 506, 550
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	212, 468
ScrFI	CCNGG	1 cut(s)	438
SduI	GDGCHC	2 cut(s)	250, 651
SfaNI	GCATC	2 cut(s)	376, 610
SfcI	CTRYAG	2 cut(s)	195, 681
SinI	GGWCC	1 cut(s)	550
SmiMI	CAYNNNNRTG	1 cut(s)	488
Sse9I	AATT	3 cut(s)	131, 288, 466
SspMI	CTAG	4 cut(s)	42, 218, 303, 479
SstI	GAGCTC	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	436
TaaI	ACNGT	2 cut(s)	321, 573
TaqI	TCGA	2 cut(s)	292, 645
TasI	AATT	3 cut(s)	131, 288, 466
TatI	WGTACW	3 cut(s)	44, 99, 172
TfiI	GAWTC	4 cut(s)	166, 294, 537, 692
Tru1I	TTAA	2 cut(s)	663, 700
Tru9I	TTAA	2 cut(s)	663, 700
TscAI	CASTG	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	5 cut(s)	291, 437, 537, 626, 648
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	597
VpaK11BI	GGWCC	1 cut(s)	550
XapI	RAATTY	2 cut(s)	288, 466
XspI	CTAG	4 cut(s)	42, 218, 303, 479
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.