Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

2889042 .. 2889828

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG043300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGGGAAAAAACGAAGTAAAACTACATGGAATGTGGGTTAGTGCTTACTCTAAGAGAGTGGAACTGGCCCTCAGACTCAAAGGCATACCTTACGAGTACATAGAAGAGGATTTGAGCAACAAGAGCCAGTTGCTCCTCGAGTACAATCCAGTTCACAAGAAGTTGTTTGAGAGCATACTCAAACTGGTGACAAGTCATGGGGAAGCACAAGAAAAAGCAGCCGCGGAAGTGATTGAGAGGCAGGGAGTGTTTGAAGAAGGAATGAAGGAGTATTTTGCAGGAGGTGCTTCTTTCACTAATGAGAAGAATTGGGGGCTACTCGACATATTGATGGGTTCAACATTTGGCGCTTACGAAGTTCATGAAGAAGTGTATGGTTTCAAACTGATGGACCCGGATAAGAATCCATTACTGTTCTCATGGATTACAAGATTGAAGGAGCATCCATTGATGAAGGGATTACTGCCTCCTCATGACAAGCTTGTCGAGTTCCTTCAACTTATTAGACGAACAAGTCATGCTAGAGGGGTTGATTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

181

Amino Acids

20.75

Weight (kDa)

6.0

Isoelectric Point (pI)

26.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	9 - 54	4.5e-07	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	485, 516
AccII	CGCG	1 cut(s)	227
AciI	CCGC	2 cut(s)	225, 227
AfaI	GTAC	2 cut(s)	101, 146
AgsI	TTSAA	6 cut(s)	257, 342, 385, 439, 500, 540
AluBI	AGCT	1 cut(s)	484
AluI	AGCT	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	2 cut(s)	70, 394
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	328, 385
BcnI	CCSGG	1 cut(s)	398
BfaI	CTAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	354
BisI	GCNGC	2 cut(s)	222, 225
BlsI	GCNGC	2 cut(s)	223, 226
Bme1390I	CCNGG	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	70, 394
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	398
BmsI	GCATC	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	398
BsaBI	GATNNNNATC	1 cut(s)	405
BsaJI	CCNNGG	1 cut(s)	225
Bse1I	ACTGG	4 cut(s)	72, 130, 152, 192
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	405
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	4 cut(s)	72, 130, 152, 192
BseRI	GAGGAG	2 cut(s)	128, 462
BseXI	GCAGC	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	398
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	140
BspACI	CCGC	2 cut(s)	225, 227
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	2 cut(s)	364, 475
BspLI	GGNNCC	1 cut(s)	396
BsrI	ACTGG	4 cut(s)	72, 130, 152, 192
BssECI	CCNNGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	417
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	54, 74
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstMWI	GCNNNNNNNGC	2 cut(s)	126, 287
BstSCI	CCNGG	1 cut(s)	396
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	445
CciI	TCATGA	2 cut(s)	364, 475
CfoI	GCGC	1 cut(s)	353
Cfr13I	GGNCC	2 cut(s)	70, 394
Cfr42I	CCGCGG	1 cut(s)	228
Csp6I	GTAC	2 cut(s)	100, 145
CviAII	CATG	6 cut(s)	29, 200, 365, 423, 476, 521
CviJI	RGCY	5 cut(s)	71, 129, 224, 319, 484
CviKI_1	RGCY	5 cut(s)	71, 129, 224, 319, 484
CviQI	GTAC	2 cut(s)	100, 145
DdeI	CTNAG	2 cut(s)	54, 74
DrdI	GACNNNNNNGTC	2 cut(s)	485, 516
DseDI	GACNNNNNNGTC	2 cut(s)	485, 516
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	140
FaeI	CATG	6 cut(s)	32, 203, 368, 426, 479, 524
FatI	CATG	6 cut(s)	28, 199, 364, 422, 475, 520
Fnu4HI	GCNGC	2 cut(s)	222, 225
FokI	GGATG	1 cut(s)	432
Fsp4HI	GCNGC	2 cut(s)	222, 225
FspBI	CTAG	1 cut(s)	525
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	222, 225
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	6 cut(s)	32, 203, 368, 426, 479, 524
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	78, 406, 536
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	77
Hpy188III	TCNNGA	2 cut(s)	365, 476
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	5 cut(s)	254, 262, 433, 451, 506
HpyCH4III	ACNGT	1 cut(s)	417
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	126, 287
HpyF3I	CTNAG	2 cut(s)	54, 74
Hsp92II	CATG	6 cut(s)	32, 203, 368, 426, 479, 524
HspAI	GCGC	1 cut(s)	351
KspI	CCGCGG	1 cut(s)	228
LmnI	GCTCC	2 cut(s)	141, 442
LpnPI	CCDG	7 cut(s)	53, 143, 165, 173, 230, 267, 411
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	4 cut(s)	119, 269, 319, 380
MluCI	AATT	2 cut(s)	310, 541
MlyI	GAGTC	1 cut(s)	72
MnlI	CCTC	8 cut(s)	83, 103, 149, 234, 278, 480, 483, 521
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	398
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	126, 287
NciI	CCSGG	1 cut(s)	398
NlaIII	CATG	6 cut(s)	32, 203, 368, 426, 479, 524
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	140
PagI	TCATGA	2 cut(s)	364, 475
PfeI	GAWTC	2 cut(s)	406, 536
PkrI	GCNGC	2 cut(s)	223, 226
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	70, 394
PspXI	VCTCGAGB	1 cut(s)	140
RsaI	GTAC	2 cut(s)	101, 146
RsaNI	GTAC	2 cut(s)	100, 145
RseI	CAYNNNNRTG	1 cut(s)	332
SacII	CCGCGG	1 cut(s)	228
SatI	GCNGC	2 cut(s)	222, 225
Sau96I	GGNCC	2 cut(s)	70, 394
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	3 cut(s)	94, 289, 486
SfaNI	GCATC	1 cut(s)	454
Sfr274I	CTCGAG	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	310, 541
SsiI	CCGC	2 cut(s)	225, 227
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	417
TaqI	TCGA	3 cut(s)	141, 324, 489
TasI	AATT	2 cut(s)	310, 541
TatI	WGTACW	2 cut(s)	99, 144
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	2 cut(s)	406, 536
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	281, 353, 381, 470
VpaK11BI	GGWCC	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.