Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016669.1

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

3901 .. 4423

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016669.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggaagaggatttgagcagcaagagccagttgctcctcgagtacaatccagttcacaagaaggtacctgtactcatccacaatggaaaacccatctccgagtcacacatcatcctagaatacatcgacgaaacttggaagactgctcctaagctcctgcctgaagatccttacgaaagagccaaagttcgattctggggtagttttatccagcaacagttgtttgagagcatactcaaactggtgacaagtcatggggaagcacaagaaaaagcagccacggaagtgattgagcggcagggagtgtttgaagaaggaatgaagaagtattttgcaggaggtgcttctttcactaatgagaagaattgggggctactagacatattgatgggttcaacatttggcgcttacgaagttcatgaagaaacttcaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

145

Amino Acids

16.54

Weight (kDa)

5.13

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	64
AccBSI	CCGCTC	1 cut(s)	295
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	3 cut(s)	44, 66, 72
AgsI	TTSAA	3 cut(s)	311, 396, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	18, 275
Asp718I	GGTACC	1 cut(s)	64
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	30, 287
BccI	CCATC	2 cut(s)	101, 382
BfaI	CTAG	2 cut(s)	116, 377
BfoI	RGCGCY	1 cut(s)	408
BisI	GCNGC	3 cut(s)	19, 276, 296
BlsI	GCNGC	3 cut(s)	20, 277, 297
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	279
Bse1I	ACTGG	3 cut(s)	28, 50, 246
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	75, 111
BseNI	ACTGG	3 cut(s)	28, 50, 246
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	30, 287
BshNI	GGYRCC	1 cut(s)	64
BsiHKCI	CYCGRG	1 cut(s)	38
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	295
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	28, 50, 246
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	279
BstF5I	GGATG	2 cut(s)	75, 111
BstH2I	RGCGCY	1 cut(s)	408
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 341
BstV1I	GCAGC	2 cut(s)	30, 287
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	75, 111
CciI	TCATGA	1 cut(s)	418
CfoI	GCGC	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	43, 65, 71
CviAII	CATG	2 cut(s)	254, 419
CviJI	RGCY	5 cut(s)	27, 154, 182, 278, 373
CviKI_1	RGCY	5 cut(s)	27, 154, 182, 278, 373
CviQI	GTAC	3 cut(s)	43, 65, 71
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	38
FaeI	CATG	2 cut(s)	257, 422
FaiI	YATR	4 cut(s)	233, 255, 383, 420
FatI	CATG	2 cut(s)	253, 418
Fnu4HI	GCNGC	3 cut(s)	19, 276, 296
FokI	GGATG	2 cut(s)	62, 98
Fsp4HI	GCNGC	3 cut(s)	19, 276, 296
FspBI	CTAG	2 cut(s)	116, 377
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	3 cut(s)	19, 276, 296
HaeII	RGCGCY	1 cut(s)	408
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	257, 422
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HinfI	GANTC	2 cut(s)	101, 192
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	55, 308
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 341
HpyF3I	CTNAG	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	257, 422
HspAI	GCGC	1 cut(s)	405
KpnI	GGTACC	1 cut(s)	68
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	3 cut(s)	39, 151, 159
Lsp1109I	GCAGC	2 cut(s)	30, 287
MaeI	CTAG	2 cut(s)	116, 377
MaeIII	GTNAC	2 cut(s)	102, 244
MalI	GATC	1 cut(s)	168
MbiI	CCGCTC	1 cut(s)	295
MboI	GATC	1 cut(s)	166
MboII	GAAGA	7 cut(s)	17, 151, 176, 323, 334, 373, 434
MflI	RGATCY	1 cut(s)	166
MluCI	AATT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	47, 332
MslI	CAYNNNNRTG	2 cut(s)	284, 386
MwoI	GCNNNNNNNGC	2 cut(s)	24, 341
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	257, 422
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	102, 244
OliI	CACNNNNGTG	1 cut(s)	284
PaeR7I	CTCGAG	1 cut(s)	38
PagI	TCATGA	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	20, 277, 297
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	3 cut(s)	44, 66, 72
RsaNI	GTAC	3 cut(s)	43, 65, 71
RseI	CAYNNNNRTG	2 cut(s)	284, 386
SatI	GCNGC	3 cut(s)	19, 276, 296
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	110
SetI	ASST	4 cut(s)	66, 70, 156, 343
Sfr274I	CTCGAG	1 cut(s)	38
SlaI	CTCGAG	1 cut(s)	38
SmiMI	CAYNNNNRTG	2 cut(s)	284, 386
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	364
SsiI	CCGC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	116, 377
TaaI	ACNGT	1 cut(s)	219
TaqI	TCGA	3 cut(s)	39, 126, 190
TasI	AATT	1 cut(s)	364
TatI	WGTACW	2 cut(s)	42, 70
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	192
TseFI	GTSAC	2 cut(s)	102, 244
TseI	GCWGC	2 cut(s)	18, 275
Tsp45I	GTSAC	2 cut(s)	102, 244
TspDTI	ATGAA	3 cut(s)	335, 407, 435
TspGWI	ACGGA	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	2 cut(s)	116, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.