Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Reverse (-)

64358023 .. 64358614

Gene Structure 592 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAGGGGGAGAGCAAAGTAAAACTACACGGAATGTGGGCTAGTACTTACTCCAAGAGAGTGGAACTGGCCCTCAAACTCAAATGCATACCTTATGAGTACATAGAAGAAGACTTGAGAAACAAGAGCCAATTGCTTCTCAAATACAATCCAGTTCACAAAAAGATTCCTGTACTCGTCCACAATGGAAAACCTATAGCCGAGTCGTACATCATCCTAGAATACATTGACGAAACTTGGAAGAGTGCTCCTAAGCTGTTTCCTGAAGATCCTTATGAAAGAGCCAGAGTTCGATTCTGGGCTAGCTTTATCCAGCAACAGTTGTTTGAAAGCATGAGCCGAATAGTGACAAGTCAGGGAGAAGCACAAGAACAAGCAGTCAAGGACGCGTTTGAGAAACTGGGAGTGTTTGAAGAAGGAATTAAGGAATATCTTCCAGAAGGTGCTTCTTTCACTAATGGCGAGAATTTGGGACTCCTAGACATATTGATGGTTGCAACATGGCCCTCACAAAGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

173

Amino Acids

19.92

Weight (kDa)

5.51

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	1.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	5e-15	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 79	1.2e-13	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	389
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	4 cut(s)	46, 101, 174, 209
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	329, 413
AluBI	AGCT	3 cut(s)	256, 306, 516
AluI	AGCT	3 cut(s)	256, 306, 516
Alw21I	GWGCWC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	69, 503
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	70, 504
AsuNHI	GCTAGC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	250
BccI	CCATC	1 cut(s)	484
BfaI	CTAG	4 cut(s)	42, 218, 303, 479
BfmI	CTRYAG	1 cut(s)	195
BmcAI	AGTACT	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	70, 504
BmrI	ACTGGG	1 cut(s)	410
BmtI	GCTAGC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	136
Bse1I	ACTGG	3 cut(s)	72, 152, 405
BseGI	GGATG	1 cut(s)	213
BseNI	ACTGG	3 cut(s)	72, 152, 405
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	71, 505
BsiHKAI	GWGCWC	1 cut(s)	250
BslFI	GGGAC	1 cut(s)	486
BsmFI	GGGAC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	71, 505
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	268
BspANI	GGCC	2 cut(s)	71, 505
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	1 cut(s)	518
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	263
BsrI	ACTGG	3 cut(s)	72, 152, 405
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	389
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	117
BstX2I	RGATCY	1 cut(s)	268
BstXI	CCANNNNNNTGG	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	71, 505
BtsCI	GGATG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	70, 504
CseI	GACGC	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	45, 100, 173, 208
CviAII	CATG	3 cut(s)	334, 501, 519
CviQI	GTAC	4 cut(s)	45, 100, 173, 208
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	89
FaeI	CATG	3 cut(s)	337, 504, 522
FaiI	YATR	9 cut(s)	89, 96, 104, 197, 276, 335, 485, 502, 520
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	3 cut(s)	333, 500, 518
FokI	GGATG	1 cut(s)	200
FspBI	CTAG	4 cut(s)	42, 218, 303, 479
HaeIII	GGCC	2 cut(s)	71, 505
HgaI	GACGC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	337, 504, 522
HinfI	GANTC	4 cut(s)	166, 203, 294, 474
Hpy166II	GTNNAC	2 cut(s)	157, 181
Hpy188III	TCNNGA	3 cut(s)	263, 437, 519
Hpy8I	GTNNAC	2 cut(s)	157, 181
HpyAV	CCTTC	2 cut(s)	410, 434
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	2 cut(s)	87, 497
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	337, 504, 522
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	1 cut(s)	253
MaeI	CTAG	4 cut(s)	42, 218, 303, 479
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	6 cut(s)	119, 122, 253, 278, 425, 425
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	3 cut(s)	131, 420, 466
MluI	ACGCGT	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	212, 468
MnlI	CCTC	2 cut(s)	83, 517
Mph1103I	ATGCAT	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	389
NdeII	GATC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	3 cut(s)	337, 504, 522
NmeAIII	GCCGAG	1 cut(s)	226
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	89
PagI	TCATGA	1 cut(s)	518
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	166, 294
PleI	GAGTC	2 cut(s)	211, 468
PpsI	GAGTC	2 cut(s)	211, 468
PspPI	GGNCC	2 cut(s)	70, 504
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	4 cut(s)	46, 101, 174, 209
RsaNI	GTAC	4 cut(s)	45, 100, 173, 208
RseI	CAYNNNNRTG	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	423
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	70, 504
ScaI	AGTACT	1 cut(s)	46
SchI	GAGTC	2 cut(s)	212, 468
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	6 cut(s)	94, 196, 258, 308, 445, 518
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	3 cut(s)	131, 420, 466
SspMI	CTAG	4 cut(s)	42, 218, 303, 479
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	292
TasI	AATT	3 cut(s)	131, 420, 466
TatI	WGTACW	3 cut(s)	44, 99, 172
TfiI	GAWTC	2 cut(s)	166, 294
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	45
XapI	RAATTY	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	4 cut(s)	42, 218, 303, 479
ZrmI	AGTACT	1 cut(s)	46
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.