Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Forward (+)

57314462 .. 57314911

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0440100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTGGGGAAGTTTGAGCTTCATGGTGTTCCAATCTCTATTCTTGCTCTTTTGAATATGGGGTTGTCAGCGGGACGCAGTCCTCAATTTCGGGATCTTTGGATTGCTTGTTTTTCATCGACTCTTTGGTTCATTTGGCATTGTAGAAACCGGGCTCGATATGAGGGTATTGAAGTTAGTGTGTCACAAGCTTGCCGGTTAATTTGTAGTAATGTTGCCGCCTTAAGTCGGTTGTCTTCGGATAGCATGTTCAATAATGTGCAGGAGCTTTGTGTCATTAAAAGAATGTGTGCTATATGCAAACCTCGTCGGGCGCCTCGAATTATTGAAGTAAACTGGTTAACCCCCCCTTTCGGTTGGATCAAAGTTAATACTGATGGTGCATGGAAAGTGGACCCAACCAGGCTGGCTATGGTGGTGTTTATAGAGACTATAAAGGCTTGGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

149

Amino Acids

16.97

Weight (kDa)

9.49

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	313
AciI	CCGC	2 cut(s)	71, 219
AclWI	GGATC	2 cut(s)	102, 368
AcyI	GRCGYC	1 cut(s)	314
AfiI	CCNNNNNNNGG	2 cut(s)	228, 353
AflII	CTTAAG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	55, 173, 253, 329
AjnI	CCWGG	1 cut(s)	401
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	3 cut(s)	19, 191, 268
AluI	AGCT	3 cut(s)	19, 191, 268
Alw26I	GTCTC	1 cut(s)	422
AlwI	GGATC	2 cut(s)	102, 368
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	228
BccI	CCATC	1 cut(s)	371
BciT130I	CCWGG	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	317
BfrI	CTTAAG	1 cut(s)	223
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	2 cut(s)	152, 403
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmiI	GGNNCC	2 cut(s)	315, 396
BmrFI	CCNGG	2 cut(s)	152, 403
BpiI	GAAGAC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	2 cut(s)	228, 353
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	228, 353
BseNI	ACTGG	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	281
BshNI	GGYRCC	1 cut(s)	313
BsiSI	CCGG	2 cut(s)	151, 196
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	228, 353
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	94, 360
BspACI	CCGC	2 cut(s)	71, 219
BspLI	GGNNCC	2 cut(s)	315, 396
BspPI	GGATC	2 cut(s)	102, 368
BspT107I	GGYRCC	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	195
BssMI	GATC	2 cut(s)	94, 360
BssNI	GRCGYC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	403
BstACI	GRCGYC	1 cut(s)	314
BstAFI	CTTAAG	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	193, 408
BstH2I	RGCGCY	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	2 cut(s)	97, 363
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	94, 360
BstNI	CCWGG	1 cut(s)	403
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	2 cut(s)	150, 401
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	94
BstYI	RGATCY	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	193, 408
CfoI	GCGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	394
CseI	GACGC	1 cut(s)	84
CviAII	CATG	3 cut(s)	23, 247, 384
CviJI	RGCY	7 cut(s)	19, 155, 191, 268, 406, 410, 440
CviKI_1	RGCY	7 cut(s)	19, 155, 191, 268, 406, 410, 440
DinI	GGCGCC	1 cut(s)	315
DpnI	GATC	2 cut(s)	96, 362
DpnII	GATC	2 cut(s)	94, 360
Eco24I	GRGCYC	1 cut(s)	157
Eco47I	GGWCC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	401
EcoT38I	GRGCYC	1 cut(s)	157
EgeI	GGCGCC	1 cut(s)	315
EheI	GGCGCC	1 cut(s)	315
FaeI	CATG	3 cut(s)	26, 250, 387
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	3 cut(s)	22, 246, 383
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	219
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	219
HaeII	RGCGCY	1 cut(s)	317
HapII	CCGG	2 cut(s)	151, 196
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	3 cut(s)	26, 250, 387
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	1 cut(s)	121
HpaI	GTTAAC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	151, 196
Hpy166II	GTNNAC	3 cut(s)	334, 342, 394
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	3 cut(s)	334, 342, 394
Hpy99I	CGWCG	1 cut(s)	312
HpyCH4V	TGCA	3 cut(s)	262, 300, 383
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	26, 250, 387
HspAI	GCGC	1 cut(s)	314
KasI	GGCGCC	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	94, 360
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	164, 209, 248, 322, 388, 392, 415
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	2 cut(s)	96, 362
MboI	GATC	2 cut(s)	94, 360
MboII	GAAGA	1 cut(s)	228
MflI	RGATCY	1 cut(s)	94
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	3 cut(s)	86, 201, 321
Mly113I	GGCGCC	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	93, 157, 315, 327
MseI	TTAA	5 cut(s)	200, 224, 279, 341, 369
MspA1I	CMGCKG	1 cut(s)	71
MspCI	CTTAAG	1 cut(s)	223
MspI	CCGG	2 cut(s)	151, 196
MspR9I	CCNGG	2 cut(s)	152, 403
MvaI	CCWGG	1 cut(s)	403
NarI	GGCGCC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	94, 360
NlaIII	CATG	3 cut(s)	26, 250, 387
NlaIV	GGNNCC	2 cut(s)	315, 396
NmuCI	GTSAC	1 cut(s)	183
NspI	RCATGY	1 cut(s)	250
PcsI	WCGNNNNNNNCGW	1 cut(s)	316
PflFI	GACNNNGTC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	315, 396
PspPI	GGNCC	1 cut(s)	394
PsuI	RGATCY	1 cut(s)	94
PsyI	GACNNNGTC	1 cut(s)	78
SaqAI	TTAA	5 cut(s)	200, 224, 279, 341, 369
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	2 cut(s)	94, 360
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	152, 403
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	4 cut(s)	21, 193, 270, 307
SfoI	GGCGCC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	3 cut(s)	86, 201, 321
SsiI	CCGC	2 cut(s)	71, 219
SspDI	GGCGCC	1 cut(s)	313
StyD4I	CCNGG	2 cut(s)	150, 401
TaqI	TCGA	3 cut(s)	119, 157, 319
TasI	AATT	3 cut(s)	86, 201, 321
TauI	GCSGC	1 cut(s)	221
Tru1I	TTAA	5 cut(s)	200, 224, 279, 341, 369
Tru9I	TTAA	5 cut(s)	200, 224, 279, 341, 369
TseFI	GTSAC	1 cut(s)	183
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	11, 105, 121
Tth111I	GACNNNGTC	1 cut(s)	78
Vha464I	CTTAAG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	250
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.