Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003983

Physical Location & Seq

Genomic Coordinates Reverse (-)

64359881 .. 64360784

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGAGGGAAAAGAAGAAGTAAAACTACATGGAATGTGGGTTAGTGCTTACTCTAAGAGAGTGGAACTGGCCCTCAGACTCAAAGGCATACCTTATGAGTACATAGAAGAGGATTTGAGCAACAAGAGCCAGTTGCTCCTCGAGTACAATCCAGTTCACAAGAAGGTACCTGTACTCATCCACAATGGAAAACCCATCTCCGAGTCACACGTCATCCTAGAATACATCGACGAAACTTGGAAGACTGCTCCTAAGCTTCTGCCTGAAGATCCTTACGAAAGAGCCAAAGTTCGATTCTGGGCTAGTTTTATCCAGCAACAGTTATTTGAGAGCATACTCAAACTGGTGACAAGTCATGGGGAAGCACAAGAAAAAGCAGCCGCGGAAGTGATTGAGAGGCAGGGAGTGTTTGAAGAAGGAATGAAGGAGTATTTTGCAGGAGGTGCTTCTTTCACTAATGAGAAGAATTGGGGGCTCCTAGACATATTGATGGTTTCAGCATTTGGCGCTTACGAAGTGCATGAAGAAGTGTATGGTTTCAAACTGATGGACCCGGATAAGAATCCATTACTGTTCTCATGGATTACAAGATTGAAGGAGCATCCATTGATGAAGGGATTACTGCCGCCGCATGACAAGCTTGTCGAGTTCCTTCAACTTATTAGACGAATAAGTCATGCTAGAGGGGCTGAATCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009404 GO:0009407 GO:0009636 GO:0009987 GO:0016740 GO:0016765 GO:0019748 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0098754 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_N GST_N_3

Protein Analysis

233

Amino Acids

26.88

Weight (kDa)

5.89

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	6 - 78	1.2e-17	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	9 - 79	6.6e-17	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	15 - 79	5e-16	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003983)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74590
fragaria_vesca	FvH4_5g15000 FvH4_5g15001
prunus_persica	Prupe.1G274400_v2.0.a1 Prupe.5G192700_v2.0.a1
pyrus_communis	pycom06g17080
rosa_chinensis	RchiOBHm_Chr4g0439891 RchiOBHm_Chr7g0181301 RchiOBHm_Chr7g0181321
rosa_laevigata	RLG00000005199 RLG00000005200 RLG00000006229
rosa_multiflora	Rmu_sc0001147.1_g000005 Rmu_sc0009047.1_g000005 Rmu_sc0016669.1_g000002 Rmu_sc0016669.1_g000003
rosa_roxburghii	Rroxscaffold_3G00272140 Rroxscaffold_3G00272150 Rroxscaffold_5G00380820
rosa_rugosa	Rorug04G0322100 Rorug05G0264100.1 Rorug06G0440100 Rorug06G0440200
rosa_samantha	Rh4AG373100 Rh7AG042100 Rh7BG040900 Rh7BG041100 Rh7CG043300 Rh7CG043400 Rh7DG042000
rosa_wichuraiana	Rw4G031900 Rw7G003460 Rw7G003470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	641, 672
Acc65I	GGTACC	1 cut(s)	166
AccB1I	GGYRCC	1 cut(s)	166
AccII	CGCG	1 cut(s)	383
AciI	CCGC	4 cut(s)	381, 383, 626, 629
AclWI	GGATC	1 cut(s)	263
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	4 cut(s)	101, 146, 168, 174
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	4 cut(s)	413, 541, 595, 656
AjiI	CACGTC	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	2 cut(s)	256, 640
AluI	AGCT	2 cut(s)	256, 640
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	377
Asp718I	GGTACC	1 cut(s)	166
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	70, 550
AsuC2I	CCSGG	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	166
BanII	GRGCYC	1 cut(s)	477
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbsI	GAAGAC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	389
BccI	CCATC	3 cut(s)	203, 484, 541
BcnI	CCSGG	1 cut(s)	554
BfaI	CTAG	4 cut(s)	218, 303, 479, 681
BfoI	RGCGCY	1 cut(s)	510
BisI	GCNGC	4 cut(s)	378, 381, 626, 629
BlsI	GCNGC	4 cut(s)	379, 382, 627, 630
Bme1390I	CCNGG	1 cut(s)	554
Bme18I	GGWCC	1 cut(s)	550
BmeT110I	CYCGRG	1 cut(s)	140
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	70, 550
BmiI	GGNNCC	3 cut(s)	168, 476, 552
BmrFI	CCNGG	1 cut(s)	554
BmsI	GCATC	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	248
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	1 cut(s)	381
Bse1I	ACTGG	4 cut(s)	72, 130, 152, 348
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	177, 213, 601
BseJI	GATNNNNATC	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	88
BseNI	ACTGG	4 cut(s)	72, 130, 152, 348
BseRI	GAGGAG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	389
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	554
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	4 cut(s)	381, 383, 626, 629
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	3 cut(s)	168, 476, 552
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	166
BsrI	ACTGG	4 cut(s)	72, 130, 152, 348
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	321, 573
Bst6I	CTCTTC	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	54, 74, 252
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	3 cut(s)	177, 213, 601
BstFNI	CGCG	1 cut(s)	383
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 443, 506, 637, 686
BstSCI	CCNGG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	1 cut(s)	389
BstV2I	GAAGAC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	177, 213, 601
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	70, 550
Cfr42I	CCGCGG	1 cut(s)	384
Csp6I	GTAC	4 cut(s)	100, 145, 167, 173
CviAII	CATG	6 cut(s)	29, 356, 521, 579, 632, 677
CviJI	RGCY	9 cut(s)	71, 129, 256, 284, 302, 380, 475, 640, 689
CviKI_1	RGCY	9 cut(s)	71, 129, 256, 284, 302, 380, 475, 640, 689
CviQI	GTAC	4 cut(s)	100, 145, 167, 173
DdeI	CTNAG	3 cut(s)	54, 74, 252
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
DrdI	GACNNNNNNGTC	2 cut(s)	641, 672
DseDI	GACNNNNNNGTC	2 cut(s)	641, 672
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	477
FaeI	CATG	6 cut(s)	32, 359, 524, 582, 635, 680
FatI	CATG	6 cut(s)	28, 355, 520, 578, 631, 676
Fnu4HI	GCNGC	4 cut(s)	378, 381, 626, 629
FokI	GGATG	3 cut(s)	164, 200, 588
FriOI	GRGCYC	1 cut(s)	477
Fsp4HI	GCNGC	4 cut(s)	378, 381, 626, 629
FspBI	CTAG	4 cut(s)	218, 303, 479, 681
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	4 cut(s)	378, 381, 626, 629
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	554
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	32, 359, 524, 582, 635, 680
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HindIII	AAGCTT	2 cut(s)	254, 638
HinfI	GANTC	5 cut(s)	78, 203, 294, 562, 692
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	2 cut(s)	77, 202
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	6 cut(s)	157, 410, 418, 589, 607, 662
HpyCH4III	ACNGT	2 cut(s)	321, 573
HpyCH4IV	ACGT	1 cut(s)	210
HpyCH4V	TGCA	2 cut(s)	437, 520
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 443, 506, 637, 686
HpyF3I	CTNAG	3 cut(s)	54, 74, 252
HpySE526I	ACGT	1 cut(s)	210
Hsp92II	CATG	6 cut(s)	32, 359, 524, 582, 635, 680
HspAI	GCGC	1 cut(s)	507
KpnI	GGTACC	1 cut(s)	170
KspI	CCGCGG	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	268
LmnI	GCTCC	4 cut(s)	141, 253, 480, 598
Lsp1109I	GCAGC	1 cut(s)	389
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	4 cut(s)	218, 303, 479, 681
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	204, 346
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	7 cut(s)	26, 119, 253, 278, 425, 475, 536
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	2 cut(s)	466, 697
MlyI	GAGTC	2 cut(s)	72, 212
MnlI	CCTC	6 cut(s)	83, 103, 149, 390, 434, 677
MslI	CAYNNNNRTG	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	5 cut(s)	126, 443, 506, 637, 686
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	6 cut(s)	32, 359, 524, 582, 635, 680
NlaIV	GGNNCC	3 cut(s)	168, 476, 552
NmuCI	GTSAC	2 cut(s)	204, 346
PaeR7I	CTCGAG	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	294, 562, 692
PkrI	GCNGC	4 cut(s)	379, 382, 627, 630
PleI	GAGTC	2 cut(s)	72, 211
PpsI	GAGTC	2 cut(s)	72, 211
PspN4I	GGNNCC	3 cut(s)	168, 476, 552
PspPI	GGNCC	2 cut(s)	70, 550
PspXI	VCTCGAGB	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	4 cut(s)	101, 146, 168, 174
RsaNI	GTAC	4 cut(s)	100, 145, 167, 173
RseI	CAYNNNNRTG	1 cut(s)	488
SacII	CCGCGG	1 cut(s)	384
SatI	GCNGC	4 cut(s)	378, 381, 626, 629
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	2 cut(s)	70, 550
SchI	GAGTC	2 cut(s)	72, 212
ScrFI	CCNGG	1 cut(s)	554
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	7 cut(s)	94, 168, 172, 213, 258, 445, 642
SfaNI	GCATC	1 cut(s)	610
Sfr274I	CTCGAG	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	384
SgrBI	CCGCGG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	488
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	2 cut(s)	466, 697
SsiI	CCGC	4 cut(s)	381, 383, 626, 629
SspMI	CTAG	4 cut(s)	218, 303, 479, 681
StyD4I	CCNGG	1 cut(s)	552
TaaI	ACNGT	2 cut(s)	321, 573
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	4 cut(s)	141, 228, 292, 645
TasI	AATT	2 cut(s)	466, 697
TatI	WGTACW	3 cut(s)	99, 144, 172
TauI	GCSGC	3 cut(s)	383, 628, 631
TfiI	GAWTC	3 cut(s)	294, 562, 692
TseFI	GTSAC	2 cut(s)	204, 346
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	2 cut(s)	204, 346
TspDTI	ATGAA	3 cut(s)	437, 537, 626
VpaK11BI	GGWCC	1 cut(s)	550
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	4 cut(s)	218, 303, 479, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.