Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Forward (+)

18594491 .. 18595657

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTCGTTTTCAGCTGGCAAGGCTACGACGTATTATTCTAGTCTCTCTGAAAGCAGCAACATATGGAAAGAAATGGCGTCGTTTAGGTGGATACTGCAACTGCACAAGGACGTCCCAAAAGCCGCTCGGTTCTACTCGGAAGGCTTGGATCTCACCGTCAAAGTCTGCACTCTCCGCTGGGCCGAGCTTCATTCCGGCCCGCTCAGGCTCGCCCTCATGCAATCCCCCAATGACCATGTCATGCAGAAGGGCTACTCTTCACTTGTATCTTTCACCGTGCCAGACATTAACCAAAGTGTGACAAAGCTGATGGTGCTGGGAGCTGAGTTAGATGGTCCTATCAAATACGAAATCCATGGCAAGGTTGCTGCGTTACGATGTATTGATGGGCACATGGTAGGCCTCTATGAACCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

140

Amino Acids

15.48

Weight (kDa)

7.8

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccBSI	CCGCTC	2 cut(s)	125, 202
AciI	CCGC	3 cut(s)	123, 175, 200
AclWI	GGATC	1 cut(s)	156
AcyI	GRCGYC	2 cut(s)	77, 111
AfiI	CCNNNNNNNGG	1 cut(s)	361
AluBI	AGCT	4 cut(s)	14, 187, 307, 323
AluI	AGCT	4 cut(s)	14, 187, 307, 323
Alw26I	GTCTC	1 cut(s)	47
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	3 cut(s)	180, 196, 400
ApeKI	GCWGC	2 cut(s)	54, 368
AspS9I	GGNCC	3 cut(s)	180, 197, 335
AsuHPI	GGTGA	2 cut(s)	145, 265
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	393
BbvI	GCAGC	2 cut(s)	66, 355
BccI	CCATC	3 cut(s)	304, 326, 380
BciVI	GTATCC	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	39
BfuI	GTATCC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	55, 123, 369
BlsI	GCNGC	3 cut(s)	56, 124, 370
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	180, 197, 335
Bpu10I	CCTNAGC	1 cut(s)	203
BsaHI	GRCGYC	2 cut(s)	77, 111
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	217, 315
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	2 cut(s)	66, 355
BseYI	CCCAGC	2 cut(s)	177, 316
BsgI	GTGCAG	2 cut(s)	86, 151
BshFI	GGCC	3 cut(s)	182, 198, 402
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	3 cut(s)	182, 198, 402
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	148
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	123, 175, 200
BspANI	GGCC	3 cut(s)	182, 198, 402
BspCNI	CTCAG	2 cut(s)	216, 316
BspPI	GGATC	1 cut(s)	156
BsrBI	CCGCTC	2 cut(s)	125, 202
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	1 cut(s)	148
BssNI	GRCGYC	2 cut(s)	77, 111
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	157, 277
Bst6I	CTCTTC	1 cut(s)	262
BstACI	GRCGYC	2 cut(s)	77, 111
BstC8I	GCNNGC	3 cut(s)	16, 200, 210
BstDEI	CTNAG	2 cut(s)	203, 324
BstDSI	CCRYGG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 174, 313
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	2 cut(s)	66, 355
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	84
BsuRI	GGCC	3 cut(s)	182, 198, 402
BtgI	CCRYGG	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	16, 200, 210
Cfr13I	GGNCC	3 cut(s)	180, 197, 335
CseI	GACGC	1 cut(s)	66
CviAII	CATG	5 cut(s)	217, 236, 241, 356, 394
DdeI	CTNAG	2 cut(s)	203, 324
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	5 cut(s)	220, 239, 244, 359, 397
FaiI	YATR	9 cut(s)	62, 64, 218, 237, 242, 357, 395, 408, 418
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	5 cut(s)	216, 235, 240, 355, 393
FauI	CCCGC	1 cut(s)	207
FauNDI	CATATG	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	55, 123, 369
Fsp4HI	GCNGC	3 cut(s)	55, 123, 369
FspBI	CTAG	1 cut(s)	39
GluI	GCNGC	3 cut(s)	55, 123, 369
GsaI	CCCAGC	2 cut(s)	181, 320
HaeIII	GGCC	3 cut(s)	182, 198, 402
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	66
Hin1I	GRCGYC	2 cut(s)	77, 111
Hin1II	CATG	5 cut(s)	220, 239, 244, 359, 397
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	145, 265
Hpy188I	TCNGA	2 cut(s)	49, 139
Hpy99I	CGWCG	2 cut(s)	31, 82
HpyAV	CCTTC	2 cut(s)	134, 241
HpyCH4III	ACNGT	2 cut(s)	157, 277
HpyCH4IV	ACGT	2 cut(s)	29, 111
HpyCH4V	TGCA	5 cut(s)	97, 103, 168, 220, 244
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 174, 313
HpyF3I	CTNAG	2 cut(s)	203, 324
HpySE526I	ACGT	2 cut(s)	29, 111
Hsp92I	GRCGYC	2 cut(s)	77, 111
Hsp92II	CATG	5 cut(s)	220, 239, 244, 359, 397
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	5 cut(s)	163, 190, 208, 294, 302
Lsp1109I	GCAGC	2 cut(s)	66, 355
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	2 cut(s)	29, 111
MaeIII	GTNAC	2 cut(s)	298, 372
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	2 cut(s)	125, 202
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	249
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	393
MnlI	CCTC	2 cut(s)	224, 413
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	2 cut(s)	14, 177
MspI	CCGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	20, 174, 313
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	62
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	220, 239, 244, 359, 397
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	402
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	56, 124, 370
PspFI	CCCAGC	2 cut(s)	177, 316
PspPI	GGNCC	3 cut(s)	180, 197, 335
PsuI	RGATCY	1 cut(s)	148
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	3 cut(s)	55, 123, 369
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	3 cut(s)	180, 197, 335
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	16, 32, 89, 114, 189, 309, 325, 366
SinI	GGWCC	1 cut(s)	335
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	3 cut(s)	123, 175, 200
SspMI	CTAG	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	157, 277
TaiI	ACGT	2 cut(s)	32, 114
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	2 cut(s)	54, 368
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	1 cut(s)	179
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	335
XspI	CTAG	1 cut(s)	39
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.