Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Reverse (-)

5631801 .. 5632887

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAGCGGCGTCGTTTAGGTGGATACTGCAATTGCACAAGGACGTCCCAAAAGCCGCTCGGTTCTACTCCGAAGGCTTGGATTTCACCGTCAACGTCTGCACTCTCCGATGGGCCGAGCTTCAGTCCGGCCCACTCAAACTTTGCCCTCATGCAATCCCCCAACTGCTAATCAAGCTTCACAGTGACCATGCCATGCAGAAGGGCTACTCTTCCCTTGTATCTTTCACAGTGTCGGACATTAACCAAACAGTGACGAAGCTAATGGCATTAGGAGCTGCGCTAGATGGTCCTATCAAATACGAAATCCATGGGAAGGTTGCTGCCCTGCGATGTATTGATGGGCACATGTTAGGCCTCTATGAACCAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

124

Amino Acids

13.66

Weight (kDa)

8.48

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	48
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	2 cut(s)	8, 57
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	11, 45
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	348
AluBI	AGCT	4 cut(s)	121, 178, 262, 278
AluI	AGCT	4 cut(s)	121, 178, 262, 278
AoxI	GGCC	3 cut(s)	114, 130, 355
ApeKI	GCWGC	3 cut(s)	5, 278, 323
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	3 cut(s)	114, 131, 290
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	348
BbvI	GCAGC	3 cut(s)	17, 265, 310
BccI	CCATC	3 cut(s)	105, 281, 335
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	18
BfaI	CTAG	1 cut(s)	284
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	5 cut(s)	6, 9, 57, 279, 324
BlsI	GCNGC	5 cut(s)	7, 10, 58, 280, 325
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	3 cut(s)	114, 131, 290
BsaHI	GRCGYC	2 cut(s)	11, 45
BsaJI	CCNNGG	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	3 cut(s)	17, 265, 310
BsgI	GTGCAG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	116, 132, 357
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	116, 132, 357
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	2 cut(s)	8, 57
BspANI	GGCC	3 cut(s)	116, 132, 357
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	310
BssNI	GRCGYC	2 cut(s)	11, 45
BssT1I	CCWWGG	1 cut(s)	310
Bst4CI	ACNGT	4 cut(s)	91, 185, 232, 253
Bst6I	CTCTTC	1 cut(s)	217
BstACI	GRCGYC	2 cut(s)	11, 45
BstDSI	CCRYGG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 275
BstNSI	RCATGY	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	3 cut(s)	17, 265, 310
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	116, 132, 357
BtgI	CCRYGG	1 cut(s)	310
BtgZI	GCGATG	1 cut(s)	346
BtsIMutI	CAGTG	3 cut(s)	190, 237, 258
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	3 cut(s)	114, 131, 290
CviAII	CATG	5 cut(s)	152, 191, 196, 311, 349
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	310
Eco147I	AGGCCT	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	5 cut(s)	155, 194, 199, 314, 352
FaiI	YATR	6 cut(s)	153, 192, 197, 312, 350, 363
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	151, 190, 195, 310, 348
Fnu4HI	GCNGC	5 cut(s)	6, 9, 57, 279, 324
Fsp4HI	GCNGC	5 cut(s)	6, 9, 57, 279, 324
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	5 cut(s)	6, 9, 57, 279, 324
HaeIII	GGCC	3 cut(s)	116, 132, 357
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	2 cut(s)	11, 45
Hin1II	CATG	5 cut(s)	155, 194, 199, 314, 352
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	176
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	73, 110, 238
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	68, 196, 310
HpyCH4III	ACNGT	4 cut(s)	91, 185, 232, 253
HpyCH4IV	ACGT	2 cut(s)	45, 96
HpyCH4V	TGCA	5 cut(s)	31, 37, 102, 155, 199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 275
HpySE526I	ACGT	2 cut(s)	45, 96
Hsp92I	GRCGYC	2 cut(s)	11, 45
Hsp92II	CATG	5 cut(s)	155, 194, 199, 314, 352
HspAI	GCGC	1 cut(s)	281
LmnI	GCTCC	1 cut(s)	275
LpnPI	CCDG	2 cut(s)	142, 341
Lsp1109I	GCAGC	3 cut(s)	17, 265, 310
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	45, 96
MaeIII	GTNAC	2 cut(s)	185, 253
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	204
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	159, 368
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	2 cut(s)	175, 275
NcoI	CCATGG	1 cut(s)	310
NlaIII	CATG	5 cut(s)	155, 194, 199, 314, 352
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	2 cut(s)	185, 253
NspI	RCATGY	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	357
PciI	ACATGT	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	7, 10, 58, 280, 325
PscI	ACATGT	1 cut(s)	348
PspPI	GGNCC	3 cut(s)	114, 131, 290
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	5 cut(s)	6, 9, 57, 279, 324
Sau96I	GGNCC	3 cut(s)	114, 131, 290
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	8 cut(s)	23, 48, 99, 123, 180, 264, 280, 321
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	1 cut(s)	32
SseBI	AGGCCT	1 cut(s)	357
SsiI	CCGC	2 cut(s)	8, 57
SspMI	CTAG	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	357
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	4 cut(s)	91, 185, 232, 253
TaiI	ACGT	2 cut(s)	48, 99
TasI	AATT	1 cut(s)	32
TauI	GCSGC	2 cut(s)	11, 59
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	3 cut(s)	190, 237, 258
TseFI	GTSAC	2 cut(s)	185, 253
TseI	GCWGC	3 cut(s)	5, 278, 323
Tsp45I	GTSAC	2 cut(s)	185, 253
TspRI	CASTG	3 cut(s)	190, 237, 258
VpaK11BI	GGWCC	1 cut(s)	290
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.