Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004222.1

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Forward (+)

2787 .. 3112

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004222.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggggtttgcctatgacttaaactggcagctgctaatcaagcttcacagtgaccatgccatgcagaagggctactcttcccttgtatctttcacagtgttggacattaaccaaacggtgacgaagctaatggcattaggagctgagctagatggtcctatcaaatacgaaatccatgggaaggttgctgccctgcgatgtattgatgggcacatgttaggcctctatgaaccagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

79

Amino Acids

8.76

Weight (kDa)

6.0

Isoelectric Point (pI)

10.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	213
AluBI	AGCT	5 cut(s)	31, 43, 127, 143, 148
AluI	AGCT	5 cut(s)	31, 43, 127, 143, 148
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	3 cut(s)	28, 31, 188
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	18, 40, 175
BccI	CCATC	2 cut(s)	146, 200
BfaI	CTAG	1 cut(s)	149
BisI	GCNGC	3 cut(s)	29, 32, 189
BlpI	GCTNAGC	1 cut(s)	144
BlsI	GCNGC	3 cut(s)	30, 33, 190
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	18, 40, 175
BshFI	GGCC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	181
BsnI	GGCC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	144
Bsp19I	CCATGG	1 cut(s)	175
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	175
Bst4CI	ACNGT	3 cut(s)	50, 97, 118
Bst6I	CTCTTC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 140
BstNSI	RCATGY	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	18, 40, 175
BsuRI	GGCC	1 cut(s)	222
BtgI	CCRYGG	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	55, 102
Cfr13I	GGNCC	1 cut(s)	155
CviAII	CATG	4 cut(s)	56, 61, 176, 214
CviJI	RGCY	7 cut(s)	31, 43, 72, 127, 143, 148, 222
CviKI_1	RGCY	7 cut(s)	31, 43, 72, 127, 143, 148, 222
DdeI	CTNAG	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	82
EarI	CTCTTC	1 cut(s)	82
Eco130I	CCWWGG	1 cut(s)	175
Eco147I	AGGCCT	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	175
FaeI	CATG	4 cut(s)	59, 64, 179, 217
FaiI	YATR	6 cut(s)	15, 57, 62, 177, 215, 228
FatI	CATG	4 cut(s)	55, 60, 175, 213
Fnu4HI	GCNGC	3 cut(s)	29, 32, 189
Fsp4HI	GCNGC	3 cut(s)	29, 32, 189
FspBI	CTAG	1 cut(s)	149
GluI	GCNGC	3 cut(s)	29, 32, 189
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	59, 64, 179, 217
HindIII	AAGCTT	1 cut(s)	41
HphI	GGTGA	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	61, 175
HpyCH4III	ACNGT	3 cut(s)	50, 97, 118
HpyCH4V	TGCA	1 cut(s)	64
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 140
HpyF3I	CTNAG	1 cut(s)	144
Hsp92II	CATG	4 cut(s)	59, 64, 179, 217
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	2 cut(s)	10, 206
Lsp1109I	GCAGC	3 cut(s)	18, 40, 175
MaeI	CTAG	1 cut(s)	149
MaeIII	GTNAC	2 cut(s)	50, 118
MboII	GAAGA	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	213
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	1 cut(s)	233
MseI	TTAA	2 cut(s)	20, 108
MspA1I	CMGCKG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	40, 140
NcoI	CCATGG	1 cut(s)	175
NlaIII	CATG	4 cut(s)	59, 64, 179, 217
NmuCI	GTSAC	2 cut(s)	50, 118
NspI	RCATGY	1 cut(s)	217
PceI	AGGCCT	1 cut(s)	222
PciI	ACATGT	1 cut(s)	213
PkrI	GCNGC	3 cut(s)	30, 33, 190
PscI	ACATGT	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	20, 108
SatI	GCNGC	3 cut(s)	29, 32, 189
Sau96I	GGNCC	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	33, 45, 129, 145, 150, 186
SgeI	CNNG	9 cut(s)	37, 52, 68, 73, 95, 161, 188, 205, 226
SinI	GGWCC	1 cut(s)	155
SseBI	AGGCCT	1 cut(s)	222
SspMI	CTAG	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	175
TaaI	ACNGT	3 cut(s)	50, 97, 118
Tru1I	TTAA	2 cut(s)	20, 108
Tru9I	TTAA	2 cut(s)	20, 108
TscAI	CASTG	2 cut(s)	55, 102
TseFI	GTSAC	2 cut(s)	50, 118
TseI	GCWGC	3 cut(s)	28, 31, 188
Tsp45I	GTSAC	2 cut(s)	50, 118
TspRI	CASTG	2 cut(s)	55, 102
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	217
XspI	CTAG	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.