Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Reverse (-)

38512273 .. 38513938

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G460500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAGCGGCGTCGTTTAGGTGGATACTGCAGTTGCACAAGGACGTACCAAAAGCCGCTCGCTTCTACGCCCAAGGCTTGGACTTCTCCGTAAATGTCTGCACTCTCCGCTGGGCTGAGCTTCAGTCGGGGCCACTCAAGCTTGCCCTCATGCATTCCCCCAATGACCATGTGATGCAGGAGGGGTACTCTTCACTCTTGTCTTTCACAGTCCCAGACATTAATCACACAGTGACAAGGTTGATGGCATTAGGAGCTGAACTAGACGGTCCTATCAAATACGAAATCCATGGGAAGGTTGCGGCCGTGCGATGTATCGATGGGCACATGTTAGGCCTCTATGAACCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

118

Amino Acids

12.96

Weight (kDa)

6.57

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	4 cut(s)	8, 57, 109, 302
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	11
AdeI	CACNNNGTG	1 cut(s)	232
AfaI	GTAC	2 cut(s)	48, 188
AfiI	CCNNNNNNNGG	2 cut(s)	79, 295
AflIII	ACRYGT	1 cut(s)	327
AluBI	AGCT	3 cut(s)	121, 142, 257
AluI	AGCT	3 cut(s)	121, 142, 257
AoxI	GGCC	3 cut(s)	131, 303, 334
ApeKI	GCWGC	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	222
AspS9I	GGNCC	2 cut(s)	131, 269
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	327
BaeI	ACNNNNGTAYC	2 cut(s)	17, 50
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	238, 314
BceAI	ACGGC	1 cut(s)	290
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	263, 352
BfmI	CTRYAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	6, 9, 57, 303
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	4 cut(s)	7, 10, 58, 304
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	2 cut(s)	131, 269
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	73, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 295
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	73, 289
BseLI	CCNNNNNNNGG	2 cut(s)	79, 295
BseMII	CTCAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	327
BseX3I	CGGCCG	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	133, 305, 336
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	79, 295
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	3 cut(s)	133, 305, 336
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	4 cut(s)	8, 57, 109, 302
BspANI	GGCC	3 cut(s)	133, 305, 336
BspCNI	CTCAG	1 cut(s)	109
BspDI	ATCGAT	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	1 cut(s)	33
BsrBI	CCGCTC	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	73, 289
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	73, 289
Bst4CI	ACNGT	3 cut(s)	211, 232, 269
Bst6I	CTCTTC	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	61, 144
BstDEI	CTNAG	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	289
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 139, 254
BstNSI	RCATGY	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	17
BstZI	CGGCCG	1 cut(s)	303
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	133, 305, 336
BsuTUI	ATCGAT	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	61, 144
Cfr13I	GGNCC	2 cut(s)	131, 269
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	47, 187
CviAII	CATG	4 cut(s)	151, 170, 290, 328
CviJI	RGCY	9 cut(s)	56, 78, 116, 121, 133, 142, 257, 305, 336
CviKI_1	RGCY	9 cut(s)	56, 78, 116, 121, 133, 142, 257, 305, 336
CviQI	GTAC	2 cut(s)	47, 187
DdeI	CTNAG	1 cut(s)	117
DraIII	CACNNNGTG	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	303
EagI	CGGCCG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
EclXI	CGGCCG	1 cut(s)	303
Eco130I	CCWWGG	2 cut(s)	73, 289
Eco147I	AGGCCT	1 cut(s)	336
Eco47I	GGWCC	1 cut(s)	269
Eco52I	CGGCCG	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	107
EcoT14I	CCWWGG	2 cut(s)	73, 289
EcoT22I	ATGCAT	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	73, 289
FaeI	CATG	4 cut(s)	154, 173, 293, 331
FaiI	YATR	5 cut(s)	152, 171, 291, 329, 342
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	4 cut(s)	150, 169, 289, 327
Fnu4HI	GCNGC	4 cut(s)	6, 9, 57, 303
Fsp4HI	GCNGC	4 cut(s)	6, 9, 57, 303
FspBI	CTAG	2 cut(s)	263, 352
GluI	GCNGC	4 cut(s)	6, 9, 57, 303
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	3 cut(s)	133, 305, 336
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	4 cut(s)	154, 173, 293, 331
HindIII	AAGCTT	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	3 cut(s)	211, 232, 269
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	5 cut(s)	31, 37, 102, 154, 178
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 139, 254
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	4 cut(s)	154, 173, 293, 331
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	3 cut(s)	97, 164, 228
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	165
MaeI	CTAG	2 cut(s)	263, 352
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	232
MbiI	CCGCTC	1 cut(s)	59
MboII	GAAGA	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	327
MnlI	CCTC	3 cut(s)	158, 175, 347
Mph1103I	ATGCAT	1 cut(s)	156
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	8, 111
Mva1269I	GAATGC	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	108, 139, 254
NcoI	CCATGG	1 cut(s)	289
NlaIII	CATG	4 cut(s)	154, 173, 293, 331
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	156
NspI	RCATGY	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	336
PciI	ACATGT	1 cut(s)	327
PctI	GAATGC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	7, 10, 58, 304
PscI	ACATGT	1 cut(s)	327
PshBI	ATTAAT	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	111
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	2 cut(s)	131, 269
PstI	CTGCAG	1 cut(s)	33
RsaI	GTAC	2 cut(s)	48, 188
RsaNI	GTAC	2 cut(s)	47, 187
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	4 cut(s)	6, 9, 57, 303
Sau96I	GGNCC	2 cut(s)	131, 269
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	8 cut(s)	23, 48, 123, 144, 242, 259, 300, 349
SfaNI	GCATC	1 cut(s)	165
SfcI	CTRYAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SseBI	AGGCCT	1 cut(s)	336
SsiI	CCGC	4 cut(s)	8, 57, 109, 302
SspMI	CTAG	2 cut(s)	263, 352
StuI	AGGCCT	1 cut(s)	336
StyI	CCWWGG	2 cut(s)	73, 289
TaaI	ACNGT	3 cut(s)	211, 232, 269
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	318
TauI	GCSGC	3 cut(s)	11, 59, 305
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	232
TspGWI	ACGGA	1 cut(s)	79
TspRI	CASTG	1 cut(s)	237
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	269
VspI	ATTAAT	1 cut(s)	222
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	2 cut(s)	263, 352
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.