Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Reverse (-)

12114597 .. 12115258

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1128900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAGCGGAGTCGTTTAGGTGGCTACTGCAGCTGCACAAGGACGTGCCAAAAGCCTCCCGGTTCAATGCGGAAGGGTTGGACTTCACCGTTAATGTCTGCACTATTCGATGGGCGAATCTACGGTTCGGCTCACTCAAGCTTTCCCTCATGCAATCCCCCAAGGATCATGTAATGCAGAATGGAAACTCTTCACTTTTGTTCTTCACGGTGCCAGACATTAACCAAACAGTGACGAACTTAATGGTATTAGGAGGAGCTGAACTTGATGGCCCTATCAAACATGAAATGAAATCGGCTGGATCGAGACAGCATGATACATACAATGACAATGAGCAAGGTTATATAGTCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

6.05

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	2 cut(s)	8, 71
AclWI	GGATC	2 cut(s)	174, 310
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	3 cut(s)	34, 142, 260
AluI	AGCT	3 cut(s)	34, 142, 260
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	174, 310
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	3 cut(s)	5, 31, 34
Asp700I	GAANNNNTTC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	79
BanI	GGYRCC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	17, 21, 43
BccI	CCATC	2 cut(s)	105, 263
BcgI	CGANNNNNNTGC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	6, 32, 35
BlsI	GCNGC	3 cut(s)	7, 33, 36
Bme1390I	CCNGG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	61
BsaJI	CCNNGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	270
BseXI	GCAGC	3 cut(s)	17, 21, 43
BsgI	GTGCAG	2 cut(s)	20, 85
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	2 cut(s)	166, 302
BspACI	CCGC	2 cut(s)	8, 71
BspANI	GGCC	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	2 cut(s)	174, 310
BspT107I	GGYRCC	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	2 cut(s)	166, 302
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	4 cut(s)	91, 126, 211, 232
Bst6I	CTCTTC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	169, 305
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	2 cut(s)	166, 302
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	17, 21, 43
BsuRI	GGCC	1 cut(s)	273
BtrI	CACGTC	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	272
CviAII	CATG	4 cut(s)	151, 170, 284, 314
CviJI	RGCY	8 cut(s)	25, 34, 56, 132, 142, 260, 273, 299
CviKI_1	RGCY	8 cut(s)	25, 34, 56, 132, 142, 260, 273, 299
DpnI	GATC	2 cut(s)	168, 304
DpnII	GATC	2 cut(s)	166, 302
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	4 cut(s)	154, 173, 287, 317
FaiI	YATR	7 cut(s)	152, 171, 285, 315, 322, 345, 347
FatI	CATG	4 cut(s)	150, 169, 283, 313
Fnu4HI	GCNGC	3 cut(s)	6, 32, 35
Fsp4HI	GCNGC	3 cut(s)	6, 32, 35
GluI	GCNGC	3 cut(s)	6, 32, 35
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	61
Hin1II	CATG	4 cut(s)	154, 173, 287, 317
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	11, 118
HpaII	CCGG	1 cut(s)	61
HphI	GGTGA	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	4 cut(s)	91, 126, 211, 232
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	5 cut(s)	31, 37, 102, 154, 178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	154, 173, 287, 317
Kzo9I	GATC	2 cut(s)	166, 302
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	3 cut(s)	74, 228, 285
Lsp1109I	GCAGC	3 cut(s)	17, 21, 43
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	168, 304
MboI	GATC	2 cut(s)	166, 302
MboII	GAAGA	2 cut(s)	183, 196
MlyI	GAGTC	1 cut(s)	20
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	3 cut(s)	67, 158, 248
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	3 cut(s)	93, 222, 242
MspA1I	CMGCKG	2 cut(s)	8, 34
MspI	CCGG	1 cut(s)	61
MspR9I	CCNGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	166, 302
NlaIII	CATG	4 cut(s)	154, 173, 287, 317
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	3 cut(s)	7, 33, 36
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	272
PstI	CTGCAG	1 cut(s)	33
PvuII	CAGCTG	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	93, 222, 242
SatI	GCNGC	3 cut(s)	6, 32, 35
Sau3AI	GATC	2 cut(s)	166, 302
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	6 cut(s)	23, 36, 48, 144, 262, 343
SfcI	CTRYAG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	2 cut(s)	8, 71
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	4 cut(s)	91, 126, 211, 232
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	109, 305, 351
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	3 cut(s)	93, 222, 242
Tru9I	TTAA	3 cut(s)	93, 222, 242
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	5, 31, 34
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	300, 305
TspRI	CASTG	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.