Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Forward (+)

11595983 .. 11596822

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G111900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCAGCGGCGTCGTTTAGGTGGGTACTACAGCTGCACAAGGACGTGCCAAAAGCTGCTCGGTTCTACTCCGAAGGCTTGGACTTCACCGTCGATGTATGTACTCTTCGCTGGGCTGAGCTTCAATCCGGCCCACTCAAACTTGCCCTCATGCAATCCCCCAATGATCATGTCATGCAGAAGGGAATGGGATACTCTTCACTTCTGTCTTTCACAGTGAAGGACATTAATCAAACAATGACAAAACTAATGGCTTTAGGAGCTGAGCTAGATTGCCCTATCAAATATGAAATCCATGGCAAGGTTGCATCCATGCGGTGTATTGATGGGCACATGTTAGGCCTCTACGAACCCGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

120

Amino Acids

13.28

Weight (kDa)

6.89

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AciI	CCGC	3 cut(s)	8, 316, 354
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	2 cut(s)	27, 103
AfiI	CCNNNNNNNGG	1 cut(s)	301
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	5 cut(s)	34, 56, 121, 263, 268
AluI	AGCT	5 cut(s)	34, 56, 121, 263, 268
AoxI	GGCC	2 cut(s)	130, 340
ApeKI	GCWGC	3 cut(s)	5, 34, 56
AseI	ATTAAT	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	333
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BbvI	GCAGC	3 cut(s)	17, 21, 43
BccI	CCATC	1 cut(s)	320
BcgI	CGANNNNNNTGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	2 cut(s)	269, 358
BfmI	CTRYAG	1 cut(s)	29
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	6, 9, 35, 57
BlpI	GCTNAGC	2 cut(s)	117, 264
BlsI	GCNGC	4 cut(s)	7, 10, 36, 58
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	317
Bpu1102I	GCTNAGC	2 cut(s)	117, 264
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	108, 255
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	17, 21, 43
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	132, 342
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	301
BsnI	GGCC	2 cut(s)	132, 342
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	166
Bsp1720I	GCTNAGC	2 cut(s)	117, 264
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	3 cut(s)	8, 316, 354
BspANI	GGCC	2 cut(s)	132, 342
BspCNI	CTCAG	2 cut(s)	109, 256
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	295
Bst4CI	ACNGT	2 cut(s)	91, 217
Bst6I	CTCTTC	2 cut(s)	111, 202
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	2 cut(s)	117, 264
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	308
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	17, 21, 43
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	132, 342
BtgI	CCRYGG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	26, 102
CviAII	CATG	6 cut(s)	151, 170, 175, 296, 313, 334
CviQI	GTAC	2 cut(s)	26, 102
DdeI	CTNAG	2 cut(s)	117, 264
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	111, 202
EarI	CTCTTC	2 cut(s)	111, 202
Eco130I	CCWWGG	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	6 cut(s)	154, 173, 178, 299, 316, 337
FaiI	YATR	8 cut(s)	100, 152, 171, 176, 288, 297, 314, 335
FatI	CATG	6 cut(s)	150, 169, 174, 295, 312, 333
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	6, 9, 35, 57
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	4 cut(s)	6, 9, 35, 57
FspBI	CTAG	2 cut(s)	269, 358
GluI	GCNGC	4 cut(s)	6, 9, 35, 57
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	132, 342
HapII	CCGG	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	6 cut(s)	154, 173, 178, 299, 316, 337
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	16, 95
HpyAV	CCTTC	3 cut(s)	68, 175, 214
HpyCH4III	ACNGT	2 cut(s)	91, 217
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	4 cut(s)	37, 154, 178, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	117, 264
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	6 cut(s)	154, 173, 178, 299, 316, 337
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	2 cut(s)	97, 142
Lsp1109I	GCAGC	3 cut(s)	17, 21, 43
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	2 cut(s)	269, 358
MaeII	ACGT	1 cut(s)	45
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	98, 189
MhlI	GDGCHC	1 cut(s)	333
MnlI	CCTC	2 cut(s)	158, 353
MseI	TTAA	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	8, 34
MspI	CCGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	6 cut(s)	154, 173, 178, 299, 316, 337
NspI	RCATGY	1 cut(s)	337
PceI	AGGCCT	1 cut(s)	342
PciI	ACATGT	1 cut(s)	333
PkrI	GCNGC	4 cut(s)	7, 10, 36, 58
PscI	ACATGT	1 cut(s)	333
PshBI	ATTAAT	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	131
PvuII	CAGCTG	1 cut(s)	34
RsaI	GTAC	2 cut(s)	27, 103
RsaNI	GTAC	2 cut(s)	26, 102
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	6, 9, 35, 57
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	8 cut(s)	23, 36, 48, 58, 123, 265, 270, 306
SfaNI	GCATC	1 cut(s)	317
SfcI	CTRYAG	1 cut(s)	29
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	3 cut(s)	8, 316, 354
SspMI	CTAG	2 cut(s)	269, 358
StuI	AGGCCT	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	91, 217
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	93
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	222
TseI	GCWGC	3 cut(s)	5, 34, 56
TspDTI	ATGAA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	228
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	2 cut(s)	269, 358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.