Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000301.1

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Reverse (-)

35996 .. 36856

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000301.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgccaatattattcaagtctccaaaaccaccgacagatggagagaaatggcagcggcgtcgtttaggtggatactgcaattgcacaaggacgtcccaaaagccgctcggttctactccgaaggcttggatttcaccgtcaacgtttgcactttccgctgggccgagcttcagtccggcccactcaaacttgccctcatgcaatcccccaagtaattccctcattctcttcactccaagactcgctctcaatgcacaccatatgttcgacgaaatgtctctgctaatcaagcttcacagtgaccatgccatgcagaagggctactcttcccttgtatctttcacggtgtcggacattaaccaaacagtgacgaagctaatggcattaggagctgagctagatggtcctatcaaatacgaaatccatgggaaggttgctgccctgcgatgtattgatgggcacatgttaggcctctatgaaccagcgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

162

Amino Acids

17.7

Weight (kDa)

9.14

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	106
AciI	CCGC	3 cut(s)	55, 104, 156
AclI	AACGTT	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	154
AcyI	GRCGYC	2 cut(s)	58, 92
AfiI	CCNNNNNNNGG	2 cut(s)	38, 430
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	16
AhdI	GACNNNNNGTC	1 cut(s)	274
AluBI	AGCT	5 cut(s)	168, 292, 376, 392, 397
AluI	AGCT	5 cut(s)	168, 292, 376, 392, 397
Alw26I	GTCTC	2 cut(s)	24, 282
AoxI	GGCC	3 cut(s)	161, 177, 469
ApeKI	GCWGC	2 cut(s)	52, 437
AspS9I	GGNCC	3 cut(s)	161, 178, 404
AsuHPI	GGTGA	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	64, 424
BccI	CCATC	3 cut(s)	32, 395, 449
BcgI	CGANNNNNNTGC	2 cut(s)	41, 75
BciVI	GTATCC	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	24, 282
BfaI	CTAG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	65
BisI	GCNGC	4 cut(s)	53, 56, 104, 438
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	4 cut(s)	54, 57, 105, 439
Bme18I	GGWCC	1 cut(s)	404
BmeRI	GACNNNNNGTC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	161, 178, 404
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaHI	GRCGYC	2 cut(s)	58, 92
BsaJI	CCNNGG	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 430
BseDI	CCNNGG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	38, 430
BseMII	CTCAG	1 cut(s)	384
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	64, 424
BseYI	CCCAGC	1 cut(s)	158
BshFI	GGCC	3 cut(s)	163, 179, 471
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	38, 430
BsmAI	GTCTC	2 cut(s)	24, 282
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	3 cut(s)	163, 179, 471
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	3 cut(s)	55, 104, 156
BspANI	GGCC	3 cut(s)	163, 179, 471
BspCNI	CTCAG	1 cut(s)	385
BsrBI	CCGCTC	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	424
BssNI	GRCGYC	2 cut(s)	58, 92
BssT1I	CCWWGG	1 cut(s)	424
Bst4CI	ACNGT	4 cut(s)	138, 299, 346, 367
Bst6I	CTCTTC	2 cut(s)	233, 331
BstACI	GRCGYC	2 cut(s)	58, 92
BstDEI	CTNAG	1 cut(s)	393
BstDSI	CCRYGG	1 cut(s)	424
BstMAI	GTCTC	2 cut(s)	24, 282
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 251, 289, 389
BstNSI	RCATGY	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	2 cut(s)	64, 424
BsuI	GTATCC	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	163, 179, 471
BtgI	CCRYGG	1 cut(s)	424
BtgZI	GCGATG	1 cut(s)	460
BtsIMutI	CAGTG	2 cut(s)	304, 372
Cfr13I	GGNCC	3 cut(s)	161, 178, 404
CseI	GACGC	1 cut(s)	47
CviAII	CATG	5 cut(s)	198, 305, 310, 425, 463
DdeI	CTNAG	1 cut(s)	393
DriI	GACNNNNNGTC	1 cut(s)	274
Eam1104I	CTCTTC	2 cut(s)	233, 331
Eam1105I	GACNNNNNGTC	1 cut(s)	274
EarI	CTCTTC	2 cut(s)	233, 331
Eco130I	CCWWGG	1 cut(s)	424
Eco147I	AGGCCT	1 cut(s)	471
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	5 cut(s)	201, 308, 313, 428, 466
FaiI	YATR	8 cut(s)	199, 261, 263, 306, 311, 426, 464, 477
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	5 cut(s)	197, 304, 309, 424, 462
FauNDI	CATATG	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	53, 56, 104, 438
Fsp4HI	GCNGC	4 cut(s)	53, 56, 104, 438
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	4 cut(s)	53, 56, 104, 438
GsaI	CCCAGC	1 cut(s)	162
HaeIII	GGCC	3 cut(s)	163, 179, 471
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	2 cut(s)	58, 92
Hin1II	CATG	5 cut(s)	201, 308, 313, 428, 466
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	240
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	2 cut(s)	120, 352
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	2 cut(s)	63, 272
HpyAV	CCTTC	3 cut(s)	115, 310, 424
HpyCH4III	ACNGT	4 cut(s)	138, 299, 346, 367
HpyCH4IV	ACGT	2 cut(s)	92, 143
HpyCH4V	TGCA	6 cut(s)	78, 84, 149, 201, 254, 313
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 251, 289, 389
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	2 cut(s)	92, 143
Hsp92I	GRCGYC	2 cut(s)	58, 92
Hsp92II	CATG	5 cut(s)	201, 308, 313, 428, 466
LmnI	GCTCC	1 cut(s)	389
LpnPI	CCDG	3 cut(s)	144, 189, 455
Lsp1109I	GCAGC	2 cut(s)	64, 424
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	92, 143
MaeIII	GTNAC	2 cut(s)	299, 367
MbiI	CCGCTC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	220, 318
MfeI	CAATTG	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	2 cut(s)	79, 214
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	3 cut(s)	205, 230, 482
MseI	TTAA	1 cut(s)	357
MspA1I	CMGCKG	2 cut(s)	55, 158
MspI	CCGG	1 cut(s)	176
MunI	CAATTG	1 cut(s)	79
MwoI	GCNNNNNNNGC	4 cut(s)	155, 251, 289, 389
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	1 cut(s)	261
NlaIII	CATG	5 cut(s)	201, 308, 313, 428, 466
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	299, 367
NspI	RCATGY	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	471
PciI	ACATGT	1 cut(s)	462
PkrI	GCNGC	4 cut(s)	54, 57, 105, 439
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PscI	ACATGT	1 cut(s)	462
Psp1406I	AACGTT	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	158
PspPI	GGNCC	3 cut(s)	161, 178, 404
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	4 cut(s)	53, 56, 104, 438
Sau96I	GGNCC	3 cut(s)	161, 178, 404
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	9 cut(s)	70, 95, 146, 170, 294, 378, 394, 399, 435
SinI	GGWCC	1 cut(s)	404
Sse9I	AATT	2 cut(s)	79, 214
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	3 cut(s)	55, 104, 156
SspI	AATATT	1 cut(s)	9
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	4 cut(s)	138, 299, 346, 367
TaiI	ACGT	2 cut(s)	95, 146
TaqI	TCGA	1 cut(s)	267
TasI	AATT	2 cut(s)	79, 214
TauI	GCSGC	2 cut(s)	58, 106
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	2 cut(s)	304, 372
TseFI	GTSAC	2 cut(s)	299, 367
TseI	GCWGC	2 cut(s)	52, 437
Tsp45I	GTSAC	2 cut(s)	299, 367
TspRI	CASTG	2 cut(s)	304, 372
VpaK11BI	GGWCC	1 cut(s)	404
XceI	RCATGY	1 cut(s)	466
XspI	CTAG	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.