Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Forward (+)

19143981 .. 19144330

Gene Structure 350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1117200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGGCAGCAACGGCGTCATTTAGGTGGATACTGCGGCTGCACAAGGACGTACCGAAAGCTGCTCGGTTCTATGCGCAAGGCTTGGACTTCACCGTCGATGTCTGTACTCTTCGCTGGGCGGAGCTGAAATCCGGCCCACTCAAACTCGCTCTCATGCAATCCCCCAAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

58

Amino Acids

6.45

Weight (kDa)

9.78

Isoelectric Point (pI)

68.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	75
AciI	CCGC	2 cut(s)	34, 119
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	51, 106
AluBI	AGCT	2 cut(s)	59, 124
AluI	AGCT	2 cut(s)	59, 124
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	3 cut(s)	5, 37, 59
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	17, 24, 46
BceAI	ACGGC	1 cut(s)	27
BciVI	GTATCC	1 cut(s)	21
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	4 cut(s)	6, 35, 38, 60
BlsI	GCNGC	4 cut(s)	7, 36, 39, 61
BmgT120I	GGNCC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	17, 24, 46
BseYI	CCCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	132
BsnI	GGCC	1 cut(s)	135
BspACI	CCGC	2 cut(s)	34, 119
BspANI	GGCC	1 cut(s)	135
BssNI	GRCGYC	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	114
BstACI	GRCGYC	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	17, 24, 46
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	135
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	2 cut(s)	50, 105
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	5 cut(s)	37, 59, 81, 124, 135
CviKI_1	RGCY	5 cut(s)	37, 59, 81, 124, 135
CviQI	GTAC	2 cut(s)	50, 105
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	134
FaeI	CATG	1 cut(s)	157
FaiI	YATR	2 cut(s)	72, 155
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	4 cut(s)	6, 35, 38, 60
Fsp4HI	GCNGC	4 cut(s)	6, 35, 38, 60
FspI	TGCGCA	1 cut(s)	75
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	4 cut(s)	6, 35, 38, 60
GsaI	CCCAGC	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	76
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	82
Hpy99I	CGWCG	1 cut(s)	98
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	40, 157
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	100, 145
Lsp1109I	GCAGC	3 cut(s)	17, 24, 46
MaeII	ACGT	1 cut(s)	48
MboII	GAAGA	1 cut(s)	101
MslI	CAYNNNNRTG	1 cut(s)	22
MspI	CCGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	11
NlaIII	CATG	1 cut(s)	157
NsbI	TGCGCA	1 cut(s)	75
PkrI	GCNGC	4 cut(s)	7, 36, 39, 61
PspFI	CCCAGC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	134
RsaI	GTAC	2 cut(s)	51, 106
RsaNI	GTAC	2 cut(s)	50, 105
RseI	CAYNNNNRTG	1 cut(s)	22
SatI	GCNGC	4 cut(s)	6, 35, 38, 60
Sau96I	GGNCC	1 cut(s)	134
SetI	ASST	4 cut(s)	26, 51, 61, 126
SgeI	CNNG	8 cut(s)	55, 75, 89, 94, 127, 144, 158, 166
SmiMI	CAYNNNNRTG	1 cut(s)	22
SsiI	CCGC	2 cut(s)	34, 119
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	96
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	37
TseI	GCWGC	3 cut(s)	5, 37, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.