Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Reverse (-)

498552 .. 498964

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1004700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 147 bp

ATGGTTTTGGGAAGAAATAGTAAAACTTGCAGAAAAAGTTTTCCCTCAGACCAGTCAGATTTGAGGCTATTTTCCGGCTATCTCTGGCAGCCATTGGGCTTCCAAATAGGTATAATCTTATTCTACACTTTCCTATCTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

49

Amino Acids

5.57

Weight (kDa)

9.62

Isoelectric Point (pI)

54.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
ApeKI	GCWGC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	100
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	100
CviJI	RGCY	4 cut(s)	67, 78, 91, 99
CviKI_1	RGCY	4 cut(s)	67, 78, 91, 99
DdeI	CTNAG	1 cut(s)	46
FaiI	YATR	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	89
HapII	CCGG	1 cut(s)	75
HpaII	CCGG	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	49, 58
HpyCH4V	TGCA	1 cut(s)	30
HpyF3I	CTNAG	1 cut(s)	46
LpnPI	CCDG	3 cut(s)	65, 70, 88
Lsp1109I	GCAGC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	24, 129
MnlI	CCTC	2 cut(s)	55, 57
MspI	CCGG	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	90
SatI	GCNGC	1 cut(s)	89
SetI	ASST	1 cut(s)	112
SgeI	CNNG	4 cut(s)	39, 64, 87, 97
TseI	GCWGC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.