Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003849

Physical Location & Seq

Genomic Coordinates Forward (+)

67206787 .. 67207072

Gene Structure 286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGCAGAAGGGCTACTCTTCCCTTGTATCTTTCACAGTGCCGGACATTAACCAAACAGTGACAAAGCTAATGACATTAGGAGCTGAGCTAGATGATCCTATCAAATACGAAATCCATGGGAAGGTTGCTGCGCTACGATGTATTGATGGGCACATGTTAGGCCTCTATGAACCAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

59

Amino Acids

6.48

Weight (kDa)

5.43

Isoelectric Point (pI)

11.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003849)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64185 AT5G41650
fragaria_vesca	FvH4_5g03750 FvH4_5g03750 FvH4_5g27350 FvH4_5g27350
malus_domestica	MD07G1004700.v1.1 MD08G1128900.v1.1 MD08G1130100.v1.1 MD14G1117200.v1.1 MD15G1108200.v1.1
prunus_persica	Prupe.1G460500_v2.0.a1 Prupe.5G111900_v2.0.a1
pyrus_communis	pycom15g09890
rosa_chinensis	RchiOBHm_Chr5g0061641 RchiOBHm_Chr6g0304921 RchiOBHm_Chr7g0195901
rosa_laevigata	RLG00000004081 RLG00000010938
rosa_multiflora	Rmu_sc0000301.1_g000010 Rmu_sc0004222.1_g000003
rosa_roxburghii	Rroxscaffold_3G00260010 Rroxscaffold_7G00163340
rosa_rugosa	Rorug06G0336200 Rorug06G0336300 Rorug07G0027300
rosa_samantha	Rh6BG453900 Rh6CG461100 Rh7AG154900 Rh7BG156600 Rh7CG160400 Rh7DG155900
rosa_wichuraiana	Rw6G038970 Rw7G013240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	153
AluBI	AGCT	3 cut(s)	67, 83, 88
AluI	AGCT	3 cut(s)	67, 83, 88
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	129
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	121
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	94
Bsp1720I	GCTNAGC	1 cut(s)	84
Bsp19I	CCATGG	1 cut(s)	115
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	37, 58
Bst6I	CTCTTC	1 cut(s)	22
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	115
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	42, 63
CfoI	GCGC	1 cut(s)	133
CviAII	CATG	2 cut(s)	116, 154
CviJI	RGCY	5 cut(s)	12, 67, 83, 88, 162
CviKI_1	RGCY	5 cut(s)	12, 67, 83, 88, 162
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	119, 157
FaiI	YATR	3 cut(s)	117, 155, 168
FatI	CATG	2 cut(s)	115, 153
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	119, 157
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	41
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	2 cut(s)	37, 58
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	119, 157
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	1 cut(s)	54
Lsp1109I	GCAGC	1 cut(s)	115
MaeI	CTAG	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	9
MhlI	GDGCHC	1 cut(s)	153
MnlI	CCTC	1 cut(s)	173
MseI	TTAA	1 cut(s)	48
MspI	CCGG	1 cut(s)	41
NcoI	CCATGG	1 cut(s)	115
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	119, 157
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	162
PciI	ACATGT	1 cut(s)	153
PkrI	GCNGC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	4 cut(s)	69, 85, 90, 126
SgeI	CNNG	5 cut(s)	35, 53, 101, 128, 166
SseBI	AGGCCT	1 cut(s)	162
SspMI	CTAG	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	37, 58
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	42, 63
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	58
TspRI	CASTG	2 cut(s)	42, 63
XceI	RCATGY	1 cut(s)	157
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.