Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

18671490 .. 18677588

Gene Structure 6099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGTCCTCTGCAACTCTCTCCTTGCTCTGCTCCTCCTTCGCCTCCCATTGCAAAATCTCATCTCCCTCTCTCAACTTCTCCAATCTCACCTCTCTCTCCCTCTCCTCTTCTTCTTCTTCTTCTCCTTCTTCGCACAAGCTGCTCTCCTCCTCTCCGCGACTCGCATTCCCTCTCCTCCCAAAGTCGTCGGAGATCGACTCCGCCGTCCTCGAAGCCGAGCTTCAAGCTCCCGAGCCTGTTGCTTCGGAGTCCGCCACCGCCGCCGCCTCGGAAGAAACCCCAAAACGCGAGGAGATTTTCGCTGTTGTTATGATTGGAGGGCGGCAGTACATTGTTATACCTGGACGTTATATCTATACACAGCGGCTCAAAGGTGCTAAGGTCAATGATAAGGTTGTTCTGAACAAGGTGCTGCTTGTGGGAACAAAAACAACTACCTACATTGGAAAACCATTAGTGACAAATGCTGCTATACATGCTGTAGTCGAAGAGCAAGGACTGAATGACAAAGTGGTTGTCTTCAAGTATAAGAAGAAGAAAAATTATAGGAGAAACATTGGTCACCGACAGCCAAATTCACGTATAAGGATAACAGCTATCACTGGCTATCAAGACTATCCAGCAGTTACCCTTGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

215

Amino Acids

23.16

Weight (kDa)

9.64

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	101 - 201	2.1e-30	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccII	CGCG	2 cut(s)	160, 291
AciI	CCGC	8 cut(s)	158, 204, 255, 261, 264, 267, 325, 367
AcsI	RAATTY	1 cut(s)	577
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	227, 526, 638
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	4 cut(s)	142, 223, 230, 599
AluI	AGCT	4 cut(s)	142, 223, 230, 599
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	142, 415, 470
ApoI	RAATTY	1 cut(s)	577
ArsI	GACNNNNNNTTYG	2 cut(s)	504, 536
AsuHPI	GGTGA	2 cut(s)	82, 557
AvaI	CYCGRG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	129, 402, 457
BceAI	ACGGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	7 cut(s)	143, 264, 267, 326, 368, 416, 471
BlsI	GCNGC	7 cut(s)	144, 265, 268, 327, 369, 417, 472
Bme1390I	CCNGG	1 cut(s)	345
BmeT110I	CYCGRG	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	514
BplI	GAGNNNNNCTC	2 cut(s)	185, 217
Bpu10I	CCTNAGC	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	610
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	49
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	6 cut(s)	25, 97, 139, 142, 167, 308
BseXI	GCAGC	3 cut(s)	129, 402, 457
Bsh1236I	CGCG	2 cut(s)	160, 291
BsiHKCI	CYCGRG	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	8 cut(s)	158, 204, 255, 261, 264, 267, 325, 367
BspFNI	CGCG	2 cut(s)	160, 291
BspQI	GCTCTTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	345
Bst6I	CTCTTC	2 cut(s)	115, 486
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	584
BstDEI	CTNAG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	563
BstFNI	CGCG	2 cut(s)	160, 291
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 142, 263, 479
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	1 cut(s)	482
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	160, 291
BstV1I	GCAGC	3 cut(s)	129, 402, 457
BstV2I	GAAGAC	1 cut(s)	514
BtsIMutI	CAGTG	1 cut(s)	603
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	1 cut(s)	479
CviJI	RGCY	9 cut(s)	142, 218, 223, 230, 238, 370, 574, 599, 609
CviKI_1	RGCY	9 cut(s)	142, 218, 223, 230, 238, 370, 574, 599, 609
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	115, 486
EarI	CTCTTC	2 cut(s)	115, 486
EciI	GGCGGA	2 cut(s)	193, 244
Eco88I	CYCGRG	1 cut(s)	233
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	343
FaeI	CATG	1 cut(s)	482
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	1 cut(s)	478
Fnu4HI	GCNGC	7 cut(s)	143, 264, 267, 326, 368, 416, 471
Fsp4HI	GCNGC	7 cut(s)	143, 264, 267, 326, 368, 416, 471
GluI	GCNGC	7 cut(s)	143, 264, 267, 326, 368, 416, 471
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	482
HinfI	GANTC	4 cut(s)	162, 200, 251, 638
HphI	GGTGA	2 cut(s)	82, 557
Hpy188I	TCNGA	4 cut(s)	193, 250, 274, 405
Hpy188III	TCNNGA	2 cut(s)	233, 614
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	49, 138
HpyCH4IV	ACGT	2 cut(s)	349, 583
HpyCH4V	TGCA	2 cut(s)	14, 54
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 142, 263, 479
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	2 cut(s)	349, 583
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	482
Kzo9I	GATC	1 cut(s)	195
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	38, 235
LpnPI	CCDG	5 cut(s)	252, 330, 357, 591, 636
Lsp1109I	GCAGC	3 cut(s)	129, 402, 457
MaeII	ACGT	2 cut(s)	349, 583
MaeIII	GTNAC	3 cut(s)	460, 563, 628
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MluCI	AATT	2 cut(s)	544, 577
MlyI	GAGTC	3 cut(s)	156, 194, 260
MmeI	TCCRAC	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	2 cut(s)	160, 291
MwoI	GCNNNNNNNGC	4 cut(s)	11, 142, 263, 479
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	1 cut(s)	482
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	460, 563
NspI	RCATGY	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	638
PkrI	GCNGC	7 cut(s)	144, 265, 268, 327, 369, 417, 472
PleI	GAGTC	3 cut(s)	156, 194, 259
PpsI	GAGTC	3 cut(s)	156, 194, 259
Ppu21I	YACGTR	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	343
PspEI	GGTNACC	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	343
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	486
SatI	GCNGC	7 cut(s)	143, 264, 267, 326, 368, 416, 471
Sau3AI	GATC	1 cut(s)	195
SchI	GAGTC	3 cut(s)	156, 194, 260
ScrFI	CCNGG	1 cut(s)	345
SfcI	CTRYAG	1 cut(s)	483
Sse9I	AATT	2 cut(s)	544, 577
SsiI	CCGC	8 cut(s)	158, 204, 255, 261, 264, 267, 325, 367
StyD4I	CCNGG	1 cut(s)	343
TaiI	ACGT	2 cut(s)	352, 586
TaqI	TCGA	3 cut(s)	198, 213, 489
TasI	AATT	2 cut(s)	544, 577
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	4 cut(s)	266, 269, 328, 370
TfiI	GAWTC	1 cut(s)	638
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	460, 563
TseI	GCWGC	3 cut(s)	142, 415, 470
Tsp45I	GTSAC	2 cut(s)	460, 563
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.