Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

54282400 .. 54285670

Gene Structure 3271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1442600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGCCTCTGCAACTGCAACAATTTCGTTATGCTCTTCATTCGCAACCCATTGCAAAATCTCGCAAAACCTTCAAACTCTGGCAACCCATTTCAGCTTTCCGTCTCTCTCCTCTTCTTCTTCCCACAAGCTGTCTTCTTGCTCTTTATGGCGACCCACATTCCCGCTTCTGATCAAGTCGTCGGAGTTGGATTCAGCCGTGGTCGTCGAGGCCGACTTTCAAGGTCCCGAACCAGAGGCCGGGCCCGATGATTCGGAGCCAGCGGCCTTGCAAGTCGTGGAAACCCCTTCGTCGGATGCCCCAAAACGAGAGCAGCTGTTCGGCGTTGTCATGATCGGTGGGCGCCAGTACATTGTCATTCCTGGACGATTTATCTATACTCAGCGGCTAAAAGGCGCTAATGTCAACGACAAGATTGTTCTCGACAAAGTGTTGCTGGTGGGGACTAAAACAAGTACGTACATTGGAAAGCCAGTGGTGACAAATGCCGCTGTACACGCTGTCGTTGAAGAGCAGGGACTTAATGACAAAGTGGTTGTCTTCAAGTATAAAAAGAAGAAAAATTATAGGAGAAACATTGGTCACCGACAGCCGAATACATGCATAAGGATAACAGCGATCACGGGCTACCAAGACTATCCAGCAGTTACTCTCGAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

222

Amino Acids

24.06

Weight (kDa)

9.0

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	108 - 208	8.8e-31	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AciI	CCGC	5 cut(s)	5, 167, 266, 388, 492
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	4 cut(s)	353, 460, 464, 498
AfiI	CCNNNNNNNGG	2 cut(s)	242, 295
AgsI	TTSAA	4 cut(s)	77, 224, 512, 547
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	3 cut(s)	99, 133, 319
AluI	AGCT	3 cut(s)	99, 133, 319
Alw26I	GTCTC	1 cut(s)	111
Ama87I	CYCGRG	1 cut(s)	656
AoxI	GGCC	5 cut(s)	6, 213, 240, 245, 267
ApaI	GGGCCC	1 cut(s)	249
ApeKI	GCWGC	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AspLEI	GCGC	2 cut(s)	348, 401
AspS9I	GGNCC	3 cut(s)	227, 245, 246
AsuC2I	CCSGG	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	493, 578
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	227
BaeGI	GKGCMC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	129, 535
BbvI	GCAGC	1 cut(s)	328
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	111
BfoI	RGCGCY	2 cut(s)	349, 402
BisI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
BlsI	GCNGC	5 cut(s)	7, 268, 318, 390, 493
Bme1390I	CCNGG	2 cut(s)	244, 366
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	3 cut(s)	227, 245, 246
BmiI	GGNNCC	4 cut(s)	229, 247, 261, 347
BmrFI	CCNGG	2 cut(s)	244, 366
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	129, 535
BpuMI	CCSGG	1 cut(s)	244
BsaAI	YACGTR	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 295
Bse1I	ACTGG	2 cut(s)	349, 476
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	242, 295
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	2 cut(s)	349, 476
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	249
BseXI	GCAGC	1 cut(s)	328
BshFI	GGCC	5 cut(s)	8, 215, 242, 247, 269
BshNI	GGYRCC	1 cut(s)	345
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	3 cut(s)	213, 460, 534
BslI	CCNNNNNNNGG	2 cut(s)	242, 295
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	3 cut(s)	213, 460, 534
BsnI	GGCC	5 cut(s)	8, 215, 242, 247, 269
BsoBI	CYCGRG	1 cut(s)	656
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	3 cut(s)	174, 336, 621
BspACI	CCGC	5 cut(s)	5, 167, 266, 388, 492
BspANI	GGCC	5 cut(s)	8, 215, 242, 247, 269
BspCNI	CTCAG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	229, 247, 261, 347
BspQI	GCTCTTC	2 cut(s)	43, 507
BspT107I	GGYRCC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	349, 476
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	3 cut(s)	174, 336, 621
BssNI	GRCGYC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	3 cut(s)	43, 121, 507
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	304
BstH2I	RGCGCY	2 cut(s)	349, 402
BstHHI	GCGC	2 cut(s)	348, 401
BstKTI	GATC	3 cut(s)	177, 339, 624
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	3 cut(s)	174, 336, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 500
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	606
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	242, 364
BstSLI	GKGCMC	1 cut(s)	249
BstSNI	TACGTA	1 cut(s)	462
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	2 cut(s)	129, 535
BsuRI	GGCC	5 cut(s)	8, 215, 242, 247, 269
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	264
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	2 cut(s)	348, 401
Cfr13I	GGNCC	3 cut(s)	227, 245, 246
Csp6I	GTAC	4 cut(s)	352, 459, 463, 497
CviAII	CATG	2 cut(s)	334, 603
CviQI	GTAC	4 cut(s)	352, 459, 463, 497
DdeI	CTNAG	1 cut(s)	384
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	3 cut(s)	176, 338, 623
DpnII	GATC	3 cut(s)	174, 336, 621
Eam1104I	CTCTTC	3 cut(s)	43, 121, 507
EarI	CTCTTC	3 cut(s)	43, 121, 507
Eco105I	TACGTA	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	656
Eco91I	GGTNACC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	227
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	364
EcoT22I	ATGCAT	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	249
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	2 cut(s)	337, 606
FaiI	YATR	8 cut(s)	34, 151, 335, 381, 552, 570, 604, 608
FaqI	GGGAC	3 cut(s)	213, 460, 534
FatI	CATG	2 cut(s)	333, 602
FauI	CCCGC	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
GlaI	GCGC	2 cut(s)	347, 400
GluI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
HaeII	RGCGCY	2 cut(s)	349, 402
HaeIII	GGCC	5 cut(s)	8, 215, 242, 247, 269
HapII	CCGG	1 cut(s)	243
HhaI	GCGC	2 cut(s)	348, 401
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	2 cut(s)	337, 606
Hin6I	GCGC	2 cut(s)	346, 399
HinP1I	GCGC	2 cut(s)	346, 399
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HinfI	GANTC	3 cut(s)	194, 254, 659
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	493, 578
Hpy166II	GTNNAC	2 cut(s)	409, 499
Hpy188I	TCNGA	4 cut(s)	174, 187, 259, 298
Hpy188III	TCNNGA	4 cut(s)	230, 334, 425, 656
Hpy8I	GTNNAC	2 cut(s)	409, 499
Hpy99I	CGWCG	3 cut(s)	187, 212, 298
HpyAV	CCTTC	2 cut(s)	83, 300
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	5 cut(s)	14, 20, 57, 274, 606
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 500
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	461
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	2 cut(s)	337, 606
HspAI	GCGC	2 cut(s)	346, 399
KasI	GGCGCC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	174, 336, 621
LguI	GCTCTTC	2 cut(s)	43, 507
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	481, 584, 649
MalI	GATC	3 cut(s)	176, 338, 623
MboI	GATC	3 cut(s)	174, 336, 621
MboII	GAAGA	8 cut(s)	30, 108, 111, 114, 129, 524, 535, 571
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	24, 565
Mly113I	GGCGCC	1 cut(s)	346
MmeI	TCCRAC	3 cut(s)	165, 171, 276
MnlI	CCTC	4 cut(s)	19, 124, 205, 232
Mph1103I	ATGCAT	1 cut(s)	608
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	4 cut(s)	266, 319, 388, 494
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	244, 366
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	11, 500
NarI	GGCGCC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	174, 336, 621
NlaIII	CATG	2 cut(s)	337, 606
NlaIV	GGNNCC	4 cut(s)	229, 247, 261, 347
NmuCI	GTSAC	2 cut(s)	481, 584
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	1 cut(s)	606
PaeR7I	CTCGAG	1 cut(s)	656
PagI	TCATGA	1 cut(s)	333
PciSI	GCTCTTC	2 cut(s)	43, 507
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	194, 254
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	7, 268, 318, 390, 493
PluTI	GGCGCC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	462
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	229, 247, 261, 347
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	3 cut(s)	227, 245, 246
PspPPI	RGGWCCY	1 cut(s)	227
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	4 cut(s)	353, 460, 464, 498
RsaNI	GTAC	4 cut(s)	352, 459, 463, 497
SapI	GCTCTTC	2 cut(s)	43, 507
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
Sau3AI	GATC	3 cut(s)	174, 336, 621
Sau96I	GGNCC	3 cut(s)	227, 245, 246
ScrFI	CCNGG	2 cut(s)	244, 366
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	75, 101, 135, 229, 321, 464
SfaNI	GCATC	1 cut(s)	289
SfoI	GGCGCC	1 cut(s)	347
Sfr274I	CTCGAG	1 cut(s)	656
SinI	GGWCC	1 cut(s)	227
SlaI	CTCGAG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SnaBI	TACGTA	1 cut(s)	462
Sse9I	AATT	2 cut(s)	24, 565
SsiI	CCGC	5 cut(s)	5, 167, 266, 388, 492
SspDI	GGCGCC	1 cut(s)	345
StyD4I	CCNGG	2 cut(s)	242, 364
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	3 cut(s)	210, 426, 657
TasI	AATT	2 cut(s)	24, 565
TatI	WGTACW	2 cut(s)	351, 496
TauI	GCSGC	4 cut(s)	8, 269, 391, 494
TfiI	GAWTC	2 cut(s)	194, 254
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	2 cut(s)	481, 584
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	2 cut(s)	481, 584
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	227
XceI	RCATGY	1 cut(s)	606
XhoI	CTCGAG	1 cut(s)	656
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.