Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

41089675 .. 41091851

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAACATATATTCAAGAGCATCGGCTGAAGGGAAACGCGTTCAGATTGGAGGGCGCCAATACATTCATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGATTGTCAATGAAGCTACAAAATTCAGATACCCAAGTGGAAACCAATTTAACTGTGGAGGCCATGGTGGACATTACCACTCACAATCTCCTGAAGCTTTTTTCTGTCATGCTTCTGGTATCAAATGGGAGAGGAGAGGCAGCAACCAATACACCCAAGCGGATATTGATCAAGTGCGAAATGAGTGGGGGAAGTTTGTTGTCAACAAATATGTGCATGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006520 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009267 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016054 GO:0019752 GO:0030062 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043617 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046395 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0071704 GO:0098798 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00061 ko00280 ko00333 ko00640 ko00780 ko01040 ko01100 ko01110 ko01130 ko01212 map00061 map00280 map00333 map00640 map00780 map01040 map01100 map01110 map01130 map01212

Pfam Domains

Protein Families

Transket_pyr Transketolase_C

Protein Analysis

116

Amino Acids

13.31

Weight (kDa)

9.58

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	2 cut(s)	48, 237
AcyI	GRCGYC	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	140, 221
AluI	AGCT	2 cut(s)	140, 221
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	57, 99
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BanI	GGYRCC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	276
BciT130I	CCWGG	1 cut(s)	75
BclI	TGATCA	1 cut(s)	292
BfoI	RGCGCY	2 cut(s)	58, 100
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	56, 109
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	111, 187
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	111, 187
BseJI	GATNNNNATC	1 cut(s)	291
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	276
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	292
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	56, 109
BspT107I	GGYRCC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	111, 187
BssMI	GATC	1 cut(s)	292
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	2 cut(s)	111, 187
Bst2UI	CCWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	55
BstDSI	CCRYGG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	58, 100
BstHHI	GCGC	2 cut(s)	57, 99
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	187
CfoI	GCGC	2 cut(s)	57, 99
CviAII	CATG	4 cut(s)	188, 233, 341, 348
CviJI	RGCY	6 cut(s)	26, 110, 140, 186, 221, 346
CviKI_1	RGCY	6 cut(s)	26, 110, 140, 186, 221, 346
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	111, 187
Eco57I	CTGAAG	2 cut(s)	48, 237
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	111, 187
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
ErhI	CCWWGG	2 cut(s)	111, 187
FaeI	CATG	4 cut(s)	191, 236, 344, 351
FatI	CATG	4 cut(s)	187, 232, 340, 347
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	265
GlaI	GCGC	2 cut(s)	56, 98
GluI	GCNGC	1 cut(s)	265
HaeII	RGCGCY	2 cut(s)	58, 100
HaeIII	GGCC	1 cut(s)	186
HhaI	GCGC	2 cut(s)	57, 99
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	191, 236, 344, 351
Hin6I	GCGC	2 cut(s)	55, 97
HinP1I	GCGC	2 cut(s)	55, 97
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	219
Hpy166II	GTNNAC	2 cut(s)	194, 328
Hpy188I	TCNGA	2 cut(s)	45, 152
Hpy188III	TCNNGA	2 cut(s)	15, 215
Hpy8I	GTNNAC	2 cut(s)	194, 328
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	1 cut(s)	340
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	4 cut(s)	191, 236, 344, 351
HspAI	GCGC	2 cut(s)	55, 97
KasI	GGCGCC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	60, 87, 225, 228
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	29
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MluCI	AATT	2 cut(s)	146, 170
MluI	ACGCGT	1 cut(s)	37
Mly113I	GGCGCC	1 cut(s)	55
MnlI	CCTC	5 cut(s)	44, 110, 176, 249, 254
MseI	TTAA	1 cut(s)	174
MspR9I	CCNGG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	39
NarI	GGCGCC	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	187
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	191, 236, 344, 351
NlaIV	GGNNCC	2 cut(s)	56, 109
PkrI	GCNGC	1 cut(s)	266
PluTI	GGCGCC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	56, 109
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	4 cut(s)	76, 117, 142, 223
SfaNI	GCATC	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	56
Sse9I	AATT	2 cut(s)	146, 170
SsiI	CCGC	1 cut(s)	284
SspDI	GGCGCC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	2 cut(s)	111, 187
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	2 cut(s)	146, 170
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	3 cut(s)	17, 56, 150
XapI	RAATTY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.