Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

38224580 .. 38235948

Gene Structure 11369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAACATATATTCAAGAGCATCGGCTGAAGGGAAACGCGTTCAGATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCCAGGTCAATGATAAGGGTCGAGAAGTTTGTCGATCAAGCTATATAGCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

54

Amino Acids

6.07

Weight (kDa)

9.8

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccII	CGCG	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	2 cut(s)	73, 111
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	57, 99
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	75, 113
BfoI	RGCGCY	2 cut(s)	58, 100
Bme1390I	CCNGG	2 cut(s)	75, 113
BmiI	GGNNCC	2 cut(s)	56, 109
BmrFI	CCNGG	2 cut(s)	75, 113
BmsI	GCATC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse118I	RCCGGY	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	75, 113
BseDI	CCNNGG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	39
BshNI	GGYRCC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	56, 109
BspT107I	GGYRCC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	143
BssNI	GRCGYC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	75, 113
BstACI	GRCGYC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	2 cut(s)	58, 100
BstHHI	GCGC	2 cut(s)	57, 99
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstNI	CCWGG	2 cut(s)	75, 113
BstSCI	CCNGG	2 cut(s)	73, 111
BstUI	CGCG	1 cut(s)	39
CfoI	GCGC	2 cut(s)	57, 99
Cfr10I	RCCGGY	1 cut(s)	158
CviJI	RGCY	4 cut(s)	26, 110, 150, 158
CviKI_1	RGCY	4 cut(s)	26, 110, 150, 158
DinI	GGCGCC	1 cut(s)	56
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eco24I	GRGCYC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	2 cut(s)	73, 111
EcoT38I	GRGCYC	1 cut(s)	112
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
FaiI	YATR	7 cut(s)	8, 10, 71, 84, 90, 153, 155
FriOI	GRGCYC	1 cut(s)	112
GlaI	GCGC	2 cut(s)	56, 98
HaeII	RGCGCY	2 cut(s)	58, 100
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	2 cut(s)	57, 99
Hin1I	GRCGYC	1 cut(s)	55
Hin6I	GCGC	2 cut(s)	55, 97
HinP1I	GCGC	2 cut(s)	55, 97
HpaII	CCGG	1 cut(s)	159
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	15, 131
HpyAV	CCTTC	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	55
HspAI	GCGC	2 cut(s)	55, 97
KasI	GGCGCC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	4 cut(s)	60, 87, 98, 125
LweI	GCATC	1 cut(s)	29
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	112
MluI	ACGCGT	1 cut(s)	37
Mly113I	GGCGCC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	44, 110
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	75, 113
MvaI	CCWGG	2 cut(s)	75, 113
MvnI	CGCG	1 cut(s)	39
NarI	GGCGCC	1 cut(s)	55
NdeII	GATC	1 cut(s)	143
NlaIV	GGNNCC	2 cut(s)	56, 109
PluTI	GGCGCC	1 cut(s)	58
Psp6I	CCWGG	2 cut(s)	73, 111
PspGI	CCWGG	2 cut(s)	73, 111
PspN4I	GGNNCC	2 cut(s)	56, 109
Sau3AI	GATC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	75, 113
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	3 cut(s)	76, 117, 152
SfaNI	GCATC	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	56
SgeI	CNNG	8 cut(s)	27, 50, 86, 87, 124, 125, 143, 159
SspDI	GGCGCC	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	73, 111
TaqI	TCGA	2 cut(s)	130, 142
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.