Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

30296882 .. 30300913

Gene Structure 4032 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCGTCGTCTGCAACTCTTTCGTTGTTGTGCTCCTCCTTCGCATCCCATTGCAAAATCTCACCTCCCGCCACAACTTCCCTCTCTCAATTCAACTCCAATCTCACCTTCCTCTCCCTCTCTTCTTCTTCTTCGTCTTCGCCGCACAAGCTCTCCTCCTCTCCGCGTCCCACATTCCCTCTCCTCCCCAAGTCGTCGGAGATTGACTCCGCCGTCCTCGAAGCCGAGCTTCAAGCTCCCGAGCCTGACGCCGAACCTCTTGCTTCCGAGCAGCCTGCCCCCGCCGCCTTGGAACTTGCTGAATCCGAACCAGCCCCAAAACGCGAGGAGATTTTCGCTGTTGTTATGATTGGAGGGCGCCAATACATTGTTATACCTGGACGATATATCTACACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGGTTGTTCTGAACAAGGTGCTGCTTGTGGGAACAAAAACAACTACCTACATTGGAAAACCAATAGTGACAAATGCTGCTATACATGCTGTAGTTGAAGAGCAAGGACTGAATGACAAAGTGGTTGTCTTCAAGTATAAGAAGAAGAAAAATTATAGGAGAAACATTGGTCACCGACAGCCAAATTCACGCATAAGGATAACAGCTATCACCGGCTATCAAGACTATCCAGCAGTTACACTTGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

225

Amino Acids

24.43

Weight (kDa)

9.37

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	112 - 212	4.5e-30	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	357
AccII	CGCG	2 cut(s)	166, 324
AciI	CCGC	6 cut(s)	69, 143, 164, 210, 282, 285
AcsI	RAATTY	1 cut(s)	610
AcyI	GRCGYC	3 cut(s)	5, 249, 358
AgsI	TTSAA	5 cut(s)	94, 233, 524, 559, 671
AjnI	CCWGG	1 cut(s)	376
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	4 cut(s)	151, 229, 236, 632
AluI	AGCT	4 cut(s)	151, 229, 236, 632
Alw21I	GWGCWC	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	239
ApeKI	GCWGC	3 cut(s)	271, 448, 503
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	2 cut(s)	537, 569
AspLEI	GCGC	2 cut(s)	360, 402
AsuHPI	GGTGA	4 cut(s)	54, 97, 590, 628
AvaI	CYCGRG	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	357
BbsI	GAAGAC	2 cut(s)	129, 547
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	283, 435, 490
BceAI	ACGGC	1 cut(s)	197
BcgI	CGANNNNNNTGC	5 cut(s)	37, 242, 257, 276, 291
BciT130I	CCWGG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	516
BfoI	RGCGCY	2 cut(s)	361, 403
BisI	GCNGC	5 cut(s)	143, 272, 285, 449, 504
BlsI	GCNGC	5 cut(s)	144, 273, 286, 450, 505
Bme1390I	CCNGG	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	359, 412
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	129, 547
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
BsaHI	GRCGYC	3 cut(s)	5, 249, 358
BsaJI	CCNNGG	2 cut(s)	288, 414
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 402, 432
Bse118I	RCCGGY	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	288, 414
BseGI	GGATG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	49
BseRI	GAGGAG	5 cut(s)	25, 145, 148, 173, 341
BseXI	GCAGC	3 cut(s)	283, 435, 490
Bsh1236I	CGCG	2 cut(s)	166, 324
BshNI	GGYRCC	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	639
BslFI	GGGAC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	35
BspACI	CCGC	6 cut(s)	69, 143, 164, 210, 282, 285
BspFNI	CGCG	2 cut(s)	166, 324
BspLI	GGNNCC	2 cut(s)	359, 412
BspQI	GCTCTTC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	2 cut(s)	288, 414
BssNI	GRCGYC	3 cut(s)	5, 249, 358
BssT1I	CCWWGG	2 cut(s)	288, 414
Bst2UI	CCWGG	1 cut(s)	378
Bst6I	CTCTTC	2 cut(s)	127, 519
BstACI	GRCGYC	3 cut(s)	5, 249, 358
BstC8I	GCNNGC	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	2 cut(s)	166, 324
BstH2I	RGCGCY	2 cut(s)	361, 403
BstHHI	GCGC	2 cut(s)	360, 402
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 148, 284, 512
BstNI	CCWGG	1 cut(s)	378
BstNSI	RCATGY	1 cut(s)	515
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	516
BstUI	CGCG	2 cut(s)	166, 324
BstV1I	GCAGC	3 cut(s)	283, 435, 490
BstV2I	GAAGAC	2 cut(s)	129, 547
BtsCI	GGATG	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	2 cut(s)	360, 402
Cfr10I	RCCGGY	1 cut(s)	638
CseI	GACGC	2 cut(s)	155, 257
CviAII	CATG	1 cut(s)	512
DinI	GGCGCC	1 cut(s)	359
DrdI	GACNNNNNNGTC	1 cut(s)	212
DseDI	GACNNNNNNGTC	1 cut(s)	212
Eam1104I	CTCTTC	2 cut(s)	127, 519
EarI	CTCTTC	2 cut(s)	127, 519
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	2 cut(s)	288, 414
Eco88I	CYCGRG	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	596
EcoO65I	GGTNACC	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	2 cut(s)	288, 414
EgeI	GGCGCC	1 cut(s)	359
EheI	GGCGCC	1 cut(s)	359
ErhI	CCWWGG	2 cut(s)	288, 414
FaeI	CATG	1 cut(s)	515
FaiI	YATR	9 cut(s)	347, 374, 387, 509, 513, 564, 582, 620, 676
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	1 cut(s)	511
FauI	CCCGC	2 cut(s)	76, 289
Fnu4HI	GCNGC	5 cut(s)	143, 272, 285, 449, 504
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	5 cut(s)	143, 272, 285, 449, 504
GlaI	GCGC	2 cut(s)	359, 401
GluI	GCNGC	5 cut(s)	143, 272, 285, 449, 504
HaeII	RGCGCY	2 cut(s)	361, 403
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	2 cut(s)	155, 257
HhaI	GCGC	2 cut(s)	360, 402
Hin1I	GRCGYC	3 cut(s)	5, 249, 358
Hin1II	CATG	1 cut(s)	515
Hin6I	GCGC	2 cut(s)	358, 400
HinP1I	GCGC	2 cut(s)	358, 400
HinfI	GANTC	3 cut(s)	206, 302, 671
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	4 cut(s)	54, 97, 590, 628
Hpy188I	TCNGA	4 cut(s)	199, 268, 307, 438
Hpy188III	TCNNGA	2 cut(s)	239, 647
Hpy99I	CGWCG	2 cut(s)	10, 199
HpyAV	CCTTC	2 cut(s)	49, 118
HpyCH4V	TGCA	2 cut(s)	14, 54
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 148, 284, 512
Hsp92I	GRCGYC	3 cut(s)	5, 249, 358
Hsp92II	CATG	1 cut(s)	515
HspAI	GCGC	2 cut(s)	358, 400
KasI	GGCGCC	1 cut(s)	357
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	3 cut(s)	38, 241, 410
LpnPI	CCDG	7 cut(s)	258, 288, 324, 363, 390, 652, 669
Lsp1109I	GCAGC	3 cut(s)	283, 435, 490
LweI	GCATC	1 cut(s)	53
MaeIII	GTNAC	3 cut(s)	493, 596, 661
MboII	GAAGA	9 cut(s)	114, 117, 120, 123, 129, 536, 547, 580, 583
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	89, 577, 610
Mly113I	GGCGCC	1 cut(s)	358
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	1 cut(s)	177
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	2 cut(s)	166, 324
MwoI	GCNNNNNNNGC	4 cut(s)	11, 148, 284, 512
NarI	GGCGCC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	515
NlaIV	GGNNCC	2 cut(s)	359, 412
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	493, 596
NspI	RCATGY	1 cut(s)	515
PciSI	GCTCTTC	1 cut(s)	519
PfeI	GAWTC	2 cut(s)	302, 671
PkrI	GCNGC	5 cut(s)	144, 273, 286, 450, 505
PleI	GAGTC	1 cut(s)	200
PluTI	GGCGCC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	376
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	359, 412
SapI	GCTCTTC	1 cut(s)	519
SatI	GCNGC	5 cut(s)	143, 272, 285, 449, 504
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	516
SfoI	GGCGCC	1 cut(s)	359
Sse9I	AATT	3 cut(s)	89, 577, 610
SsiI	CCGC	6 cut(s)	69, 143, 164, 210, 282, 285
SspDI	GGCGCC	1 cut(s)	357
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	288, 414
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	89, 577, 610
TauI	GCSGC	2 cut(s)	145, 287
TfiI	GAWTC	2 cut(s)	302, 671
TseFI	GTSAC	2 cut(s)	493, 596
TseI	GCWGC	3 cut(s)	271, 448, 503
Tsp45I	GTSAC	2 cut(s)	493, 596
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.