Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001301.1

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Reverse (-)

53941 .. 59036

Gene Structure 5096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001301.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atggagtgtgaggagcagctcgacgaagccgtcgagcatgtagtcggcggcgatgacgatagcggtgacggagagcatggtctgctccttgagggcgagggaaacgtggacgccattggcgggtttctggatcaaggcgcggagggtttcgatgaggcggtggagggttttggggagggaatccgggtcggatgtgaagagcgggtaggagaactcttcgaggaagacgatgagctggagcttcagagggcttggtcgatgaggtccaccggacaaatcagaacccagggatttaacactgcatcaacacacaccatcatcattataaacgcaaagaatgaagcaaaggagatcgaaatcacgacttgcaggttttggagcttgatgtggctccagatctgcttcacggcctcggcgcgagagcactcaggggcgctgccgagagctggagagatcggagtcggctttagaatggcagcgttcctattgacgtttctcttgggcttgatcgcgtcggcatcggcgtctgctttgggcttcgtcttccccttcgattttggtgcggcggcggcgaccttgacggcggttccagcagtggatgtggaggacttggctggcagtgggaagagaagaacatggaccttggttgttctgaacaaggtgctgcttgtgggaacaaaaacaactacctacattggaaaaccaatagtgacaaatgctgctatacatgctgtagttgaagagcaaggactgaatgacaaagtggttgtcttcaagtataagaagaagaaaaattatcggagaaacattggtcaccgacagccaaattcacgcataaggataacagctatcaccggctatcaagactatccagcagttacccttgaatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

297

Amino Acids

32.27

Weight (kDa)

4.89

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	326
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	360
AccBSI	CCGCTC	1 cut(s)	202
AccII	CGCG	3 cut(s)	140, 418, 512
AclWI	GGATC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	227
AcyI	GRCGYC	2 cut(s)	111, 524
AfiI	CCNNNNNNNGG	2 cut(s)	120, 446
AgsI	TTSAA	3 cut(s)	740, 775, 887
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	6 cut(s)	19, 235, 241, 381, 446, 848
AluI	AGCT	6 cut(s)	19, 235, 241, 381, 446, 848
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	5 cut(s)	16, 436, 476, 664, 719
ApoI	RAATTY	1 cut(s)	826
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AspLEI	GCGC	3 cut(s)	140, 418, 436
AspS9I	GGNCC	2 cut(s)	264, 639
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	77, 806, 844
AvaII	GGWCC	2 cut(s)	264, 639
BbsI	GAAGAC	3 cut(s)	231, 535, 763
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	5 cut(s)	28, 423, 488, 651, 706
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	3 cut(s)	14, 423, 597
BcgI	CGANNNNNNTGC	2 cut(s)	542, 576
BciT130I	CCWGG	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	437
BfuAI	ACCTGC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	396
BisI	GCNGC	9 cut(s)	17, 49, 437, 477, 564, 567, 570, 665, 720
BlsI	GCNGC	9 cut(s)	18, 50, 438, 478, 565, 568, 571, 666, 721
Bme1390I	CCNGG	2 cut(s)	185, 287
Bme18I	GGWCC	2 cut(s)	264, 639
BmgT120I	GGNCC	2 cut(s)	264, 639
BmiI	GGNNCC	2 cut(s)	392, 588
BmrFI	CCNGG	2 cut(s)	185, 287
BmsI	GCATC	2 cut(s)	311, 527
BpiI	GAAGAC	3 cut(s)	231, 535, 763
BpmI	CTGGAG	3 cut(s)	257, 377, 468
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	111, 524
BsaJI	CCNNGG	4 cut(s)	285, 286, 411, 642
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 446
Bse118I	RCCGGY	1 cut(s)	854
Bse8I	GATNNNNATC	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	4 cut(s)	285, 286, 411, 642
BseGI	GGATG	2 cut(s)	197, 604
BseJI	GATNNNNATC	1 cut(s)	356
BseLI	CCNNNNNNNGG	2 cut(s)	120, 446
BseMII	CTCAG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	28, 423, 488, 651, 706
Bsh1236I	CGCG	3 cut(s)	140, 418, 512
BshFI	GGCC	1 cut(s)	410
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	3 cut(s)	184, 270, 855
BslI	CCNNNNNNNGG	2 cut(s)	120, 446
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	130, 351, 396, 453, 507
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	440
BspFNI	CGCG	3 cut(s)	140, 418, 512
BspLI	GGNNCC	2 cut(s)	392, 588
BspMI	ACCTGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	138
BspQI	GCTCTTC	2 cut(s)	192, 735
BsrBI	CCGCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	854
BssAI	RCCGGY	1 cut(s)	854
BssECI	CCNNGG	4 cut(s)	285, 286, 411, 642
BssMI	GATC	5 cut(s)	130, 351, 396, 453, 507
BssNI	GRCGYC	2 cut(s)	111, 524
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	287
Bst6I	CTCTTC	4 cut(s)	192, 221, 620, 735
BstACI	GRCGYC	2 cut(s)	111, 524
BstAPI	GCANNNNNTGC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	427
BstEII	GGTNACC	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	197, 604
BstFNI	CGCG	3 cut(s)	140, 418, 512
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	3 cut(s)	140, 418, 436
BstKTI	GATC	5 cut(s)	133, 354, 399, 456, 510
BstMBI	GATC	5 cut(s)	130, 351, 396, 453, 507
BstMWI	GCNNNNNNNGC	4 cut(s)	82, 569, 590, 728
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	41, 731
BstPI	GGTNACC	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	183, 285
BstSFI	CTRYAG	1 cut(s)	732
BstUI	CGCG	3 cut(s)	140, 418, 512
BstV1I	GCAGC	5 cut(s)	28, 423, 488, 651, 706
BstV2I	GAAGAC	3 cut(s)	231, 535, 763
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	197, 604
BtsI	GCAGTG	3 cut(s)	297, 600, 625
BtsIMutI	CAGTG	3 cut(s)	297, 600, 625
BveI	ACCTGC	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	616
CfoI	GCGC	3 cut(s)	140, 418, 436
Cfr10I	RCCGGY	1 cut(s)	854
Cfr13I	GGNCC	2 cut(s)	264, 639
CseI	GACGC	3 cut(s)	119, 501, 513
CviAII	CATG	4 cut(s)	38, 77, 636, 728
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	5 cut(s)	132, 353, 398, 455, 509
DpnII	GATC	5 cut(s)	130, 351, 396, 453, 507
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	4 cut(s)	192, 221, 620, 735
EarI	CTCTTC	4 cut(s)	192, 221, 620, 735
Eco130I	CCWWGG	1 cut(s)	642
Eco47I	GGWCC	2 cut(s)	264, 639
Eco57I	CTGAAG	1 cut(s)	227
Eco91I	GGTNACC	1 cut(s)	812
EcoO65I	GGTNACC	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	642
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	4 cut(s)	41, 80, 639, 731
FaiI	YATR	9 cut(s)	39, 78, 326, 637, 725, 729, 780, 836, 892
FatI	CATG	4 cut(s)	37, 76, 635, 727
FauI	CCCGC	2 cut(s)	113, 195
Fnu4HI	GCNGC	9 cut(s)	17, 49, 437, 477, 564, 567, 570, 665, 720
FokI	GGATG	2 cut(s)	204, 611
Fsp4HI	GCNGC	9 cut(s)	17, 49, 437, 477, 564, 567, 570, 665, 720
GlaI	GCGC	3 cut(s)	139, 417, 435
GluI	GCNGC	9 cut(s)	17, 49, 437, 477, 564, 567, 570, 665, 720
GsuI	CTGGAG	3 cut(s)	257, 377, 468
HaeII	RGCGCY	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	3 cut(s)	184, 270, 855
HgaI	GACGC	3 cut(s)	119, 501, 513
HhaI	GCGC	3 cut(s)	140, 418, 436
Hin1I	GRCGYC	2 cut(s)	111, 524
Hin1II	CATG	4 cut(s)	41, 80, 639, 731
Hin6I	GCGC	3 cut(s)	138, 416, 434
HinP1I	GCGC	3 cut(s)	138, 416, 434
HinfI	GANTC	3 cut(s)	180, 459, 887
HpaII	CCGG	3 cut(s)	184, 270, 855
HphI	GGTGA	3 cut(s)	77, 806, 844
Hpy166II	GTNNAC	2 cut(s)	109, 267
Hpy188I	TCNGA	6 cut(s)	191, 246, 281, 458, 654, 801
Hpy188III	TCNNGA	4 cut(s)	128, 361, 394, 863
Hpy8I	GTNNAC	2 cut(s)	109, 267
Hpy99I	CGWCG	3 cut(s)	26, 35, 517
HpyAV	CCTTC	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	105, 491
HpyCH4V	TGCA	2 cut(s)	302, 369
HpyF10VI	GCNNNNNNNGC	4 cut(s)	82, 569, 590, 728
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	105, 491
Hsp92I	GRCGYC	2 cut(s)	111, 524
Hsp92II	CATG	4 cut(s)	41, 80, 639, 731
HspAI	GCGC	3 cut(s)	138, 416, 434
Kzo9I	GATC	5 cut(s)	130, 351, 396, 453, 507
LguI	GCTCTTC	2 cut(s)	192, 735
LmnI	GCTCC	5 cut(s)	13, 90, 238, 378, 396
Lsp1109I	GCAGC	5 cut(s)	28, 423, 488, 651, 706
LweI	GCATC	2 cut(s)	311, 527
MaeII	ACGT	2 cut(s)	105, 491
MaeIII	GTNAC	4 cut(s)	65, 709, 812, 877
MalI	GATC	5 cut(s)	132, 353, 398, 455, 509
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	5 cut(s)	130, 351, 396, 453, 507
MflI	RGATCY	1 cut(s)	396
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	2 cut(s)	793, 826
MlyI	GAGTC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	169
MseI	TTAA	1 cut(s)	294
MspI	CCGG	3 cut(s)	184, 270, 855
MspR9I	CCNGG	2 cut(s)	185, 287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	3 cut(s)	140, 418, 512
MwoI	GCNNNNNNNGC	4 cut(s)	82, 569, 590, 728
NciI	CCSGG	1 cut(s)	185
NdeII	GATC	5 cut(s)	130, 351, 396, 453, 507
NlaIII	CATG	4 cut(s)	41, 80, 639, 731
NlaIV	GGNNCC	2 cut(s)	392, 588
NmeAIII	GCCGAG	2 cut(s)	392, 465
NmuCI	GTSAC	3 cut(s)	65, 709, 812
NspI	RCATGY	2 cut(s)	41, 731
PasI	CCCWGGG	1 cut(s)	286
PciSI	GCTCTTC	2 cut(s)	192, 735
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 30, 225, 521
PfeI	GAWTC	2 cut(s)	180, 887
PkrI	GCNGC	9 cut(s)	18, 50, 438, 478, 565, 568, 571, 666, 721
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
PsiI	TTATAA	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	812
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	392, 588
PspPI	GGNCC	2 cut(s)	264, 639
PsuI	RGATCY	1 cut(s)	396
SapI	GCTCTTC	2 cut(s)	192, 735
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	9 cut(s)	17, 49, 437, 477, 564, 567, 570, 665, 720
Sau3AI	GATC	5 cut(s)	130, 351, 396, 453, 507
Sau96I	GGNCC	2 cut(s)	264, 639
SchI	GAGTC	1 cut(s)	468
ScrFI	CCNGG	2 cut(s)	185, 287
SduI	GDGCHC	1 cut(s)	426
SfaNI	GCATC	2 cut(s)	311, 527
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	2 cut(s)	264, 639
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	793, 826
StyD4I	CCNGG	2 cut(s)	183, 285
StyI	CCWWGG	1 cut(s)	642
TaiI	ACGT	2 cut(s)	108, 494
TaqI	TCGA	7 cut(s)	21, 33, 150, 219, 257, 354, 552
TasI	AATT	2 cut(s)	793, 826
TauI	GCSGC	4 cut(s)	51, 566, 569, 572
TfiI	GAWTC	2 cut(s)	180, 887
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	304, 600, 625
TseFI	GTSAC	3 cut(s)	65, 709, 812
TseI	GCWGC	5 cut(s)	16, 436, 476, 664, 719
Tsp45I	GTSAC	3 cut(s)	65, 709, 812
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	304, 600, 625
VpaK11BI	GGWCC	2 cut(s)	264, 639
XapI	RAATTY	1 cut(s)	826
XceI	RCATGY	2 cut(s)	41, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.