Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Reverse (-)

38030496 .. 38037702

Gene Structure 7207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG200000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAACATATATTCAAGAGCATCGGCTGAAGGGAAACGCGTTCAGATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACATCGCCTCAAAGGAGCCAAGGTCAATGATAAGATTCTTGAATGCATAAGAAACATGAGCAAAGCCACAACTCTCGAATCCTCGGAAGCTGCCCTCAAATTCGAGAGCTACAAAGGCCACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

72

Amino Acids

8.16

Weight (kDa)

9.67

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AccII	CGCG	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	48
AcyI	GRCGYC	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	2 cut(s)	15, 134
AjnI	CCWGG	1 cut(s)	73
AluBI	AGCT	2 cut(s)	182, 201
AluI	AGCT	2 cut(s)	182, 201
AoxI	GGCC	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	58
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	56, 109
BmrFI	CCNGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	2 cut(s)	111, 174
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
BseBI	CCWGG	1 cut(s)	75
BseDI	CCNNGG	2 cut(s)	111, 174
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	210
BshNI	GGYRCC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	56, 109
BspT107I	GGYRCC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	111, 174
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	75
BstACI	GRCGYC	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	39
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	75
BstSCI	CCNGG	1 cut(s)	73
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	210
BtgZI	GCGATG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	57
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	6 cut(s)	26, 110, 158, 182, 201, 210
CviKI_1	RGCY	6 cut(s)	26, 110, 158, 182, 201, 210
DinI	GGCGCC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	111
EcoT22I	ATGCAT	1 cut(s)	140
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	1 cut(s)	151
FaiI	YATR	7 cut(s)	8, 10, 71, 84, 90, 140, 149
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	210
HhaI	GCGC	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	127, 170
Hpy188I	TCNGA	2 cut(s)	45, 178
Hpy188III	TCNNGA	4 cut(s)	15, 131, 167, 196
HpyAV	CCTTC	1 cut(s)	23
HpyCH4V	TGCA	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	55
KasI	GGCGCC	1 cut(s)	54
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	2 cut(s)	60, 87
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	29
MluCI	AATT	1 cut(s)	191
MluI	ACGCGT	1 cut(s)	37
Mly113I	GGCGCC	1 cut(s)	55
MnlI	CCTC	4 cut(s)	44, 110, 184, 197
Mph1103I	ATGCAT	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	75
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	207
NarI	GGCGCC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	56, 109
NsiI	ATGCAT	1 cut(s)	140
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	2 cut(s)	127, 170
PkrI	GCNGC	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	56, 109
SatI	GCNGC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	75
SetI	ASST	4 cut(s)	76, 117, 184, 203
SfaNI	GCATC	1 cut(s)	29
SfoI	GGCGCC	1 cut(s)	56
Sse9I	AATT	1 cut(s)	191
SspDI	GGCGCC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	73
StyI	CCWWGG	1 cut(s)	111
TaqI	TCGA	2 cut(s)	168, 195
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	127, 170
TseI	GCWGC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.