Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

48081719 .. 48094233

Gene Structure 12515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGCTTCCAAACAAAGAGGCAGCTGCATAGGTGGAGAATTGCTTCATGTTAATACTATTGGTAATCTATGTGCACTCGGTTGTCCTTCTTCATCAGCTCGGCCCGGTCTTATAGGTTCCAAGCGGTCGACTCTCTTTCACTCTTTCTCAGCAAAGCTTGCATTTCGAAAGATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGTTACGAGTTTACGAACTCAAAAATAGATCACTCAATGAAGGTCTGCTTTGTATTAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

104

Amino Acids

11.4

Weight (kDa)

10.09

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	1 cut(s)	124
AcyI	GRCGYC	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	3 cut(s)	24, 98, 157
AluI	AGCT	3 cut(s)	24, 98, 157
Alw21I	GWGCWC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	101
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	21, 24
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	183, 225
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	105
AsuII	TTCGAA	1 cut(s)	166
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	11, 33
BciT130I	CCWGG	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	105
BfoI	RGCGCY	2 cut(s)	184, 226
BisI	GCNGC	2 cut(s)	22, 25
BlsI	GCNGC	2 cut(s)	23, 26
Bme1390I	CCNGG	2 cut(s)	105, 201
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	3 cut(s)	118, 182, 235
BmrFI	CCNGG	2 cut(s)	105, 201
Bpu14I	TTCGAA	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	162
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	11, 33
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	180
BsiEI	CGRYCG	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	161
BspLI	GGNNCC	3 cut(s)	118, 182, 235
BspT104I	TTCGAA	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	278
BssNI	GRCGYC	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	181
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	159
BstDEI	CTNAG	1 cut(s)	148
BstH2I	RGCGCY	2 cut(s)	184, 226
BstHHI	GCGC	2 cut(s)	183, 225
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	103, 199
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	11, 33
BsuRI	GGCC	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	159
CfoI	GCGC	2 cut(s)	183, 225
Cfr13I	GGNCC	1 cut(s)	102
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	6 cut(s)	5, 24, 98, 103, 157, 236
CviKI_1	RGCY	6 cut(s)	5, 24, 98, 103, 157, 236
DdeI	CTNAG	1 cut(s)	148
DinI	GGCGCC	1 cut(s)	182
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	182
EheI	GGCGCC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	1 cut(s)	50
FaiI	YATR	7 cut(s)	29, 48, 70, 113, 197, 210, 216
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FatI	CATG	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	22, 25
Fsp4HI	GCNGC	2 cut(s)	22, 25
GlaI	GCGC	2 cut(s)	182, 224
GluI	GCNGC	2 cut(s)	22, 25
HaeII	RGCGCY	2 cut(s)	184, 226
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	2 cut(s)	183, 225
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	50
Hin6I	GCGC	2 cut(s)	181, 223
HinP1I	GCGC	2 cut(s)	181, 223
HincII	GTYRAC	1 cut(s)	129
HindII	GTYRAC	1 cut(s)	129
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	3 cut(s)	74, 129, 262
Hpy8I	GTNNAC	3 cut(s)	74, 129, 262
HpyAV	CCTTC	2 cut(s)	96, 284
HpyCH4V	TGCA	3 cut(s)	27, 74, 161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	1 cut(s)	148
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	50
HspAI	GCGC	2 cut(s)	181, 223
KasI	GGCGCC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	3 cut(s)	118, 186, 213
Lsp1109I	GCAGC	2 cut(s)	11, 33
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	1 cut(s)	81
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	1 cut(s)	38
Mly113I	GGCGCC	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	3 cut(s)	11, 170, 236
MroXI	GAANNNNTTC	1 cut(s)	42
MseI	TTAA	2 cut(s)	51, 306
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	105, 201
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	1 cut(s)	158
NarI	GGCGCC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	105
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	1 cut(s)	50
NlaIV	GGNNCC	3 cut(s)	118, 182, 235
NmeAIII	GCCGAG	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	42
PkrI	GCNGC	2 cut(s)	23, 26
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	118, 182, 235
PspPI	GGNCC	1 cut(s)	102
PvuII	CAGCTG	1 cut(s)	24
SalI	GTCGAC	1 cut(s)	127
SaqAI	TTAA	2 cut(s)	51, 306
SatI	GCNGC	2 cut(s)	22, 25
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	2 cut(s)	105, 201
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	26, 34, 100, 118, 159, 202, 243, 295
SfoI	GGCGCC	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	166
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	1 cut(s)	124
SspDI	GGCGCC	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	103, 199
StyI	CCWWGG	1 cut(s)	237
TaqI	TCGA	2 cut(s)	128, 166
TasI	AATT	1 cut(s)	38
Tru1I	TTAA	2 cut(s)	51, 306
Tru9I	TTAA	2 cut(s)	51, 306
TseI	GCWGC	2 cut(s)	21, 24
TspDTI	ATGAA	3 cut(s)	35, 81, 303
VneI	GTGCAC	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.