Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Reverse (-)

78857412 .. 78866404

Gene Structure 8993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG562100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCAGTACATGAAGATGCAACTTTAACGTACCATGATGTTTCTCGAGTTTTTCTTCAAGAGAATGGGGCAAGATGTTTGATGAAATCTCTCAAAGAGGCTGGCATGAACATATATTCAAGAGCATCGGCTGAAGGGAAACGCGTTCAGATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGATCAAATTTTACTCCCTGATCATGCCCCTTGTTATTCGCAAAATGATTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

94

Amino Acids

10.75

Weight (kDa)

9.76

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	9, 32
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	2 cut(s)	59, 120
AjnI	CCWGG	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	236
AspLEI	GCGC	2 cut(s)	162, 204
AvaI	CYCGRG	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	1 cut(s)	249
BfoI	RGCGCY	2 cut(s)	163, 205
Bme1390I	CCNGG	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	45
BmiI	GGNNCC	2 cut(s)	161, 214
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	7, 134
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	144
BshNI	GGYRCC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	45
BsoBI	CYCGRG	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	231, 249
BspFNI	CGCG	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	161, 214
BspT107I	GGYRCC	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	231, 249
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	2 cut(s)	163, 205
BstHHI	GCGC	2 cut(s)	162, 204
BstKTI	GATC	2 cut(s)	234, 252
BstMBI	GATC	2 cut(s)	231, 249
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	103
CfoI	GCGC	2 cut(s)	162, 204
Csp6I	GTAC	2 cut(s)	8, 31
CviAII	CATG	4 cut(s)	11, 35, 106, 253
CviJI	RGCY	3 cut(s)	101, 131, 215
CviKI_1	RGCY	3 cut(s)	101, 131, 215
CviQI	GTAC	2 cut(s)	8, 31
DinI	GGCGCC	1 cut(s)	161
DpnI	GATC	2 cut(s)	233, 251
DpnII	GATC	2 cut(s)	231, 249
Eco130I	CCWWGG	1 cut(s)	216
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	1 cut(s)	216
EgeI	GGCGCC	1 cut(s)	161
EheI	GGCGCC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	4 cut(s)	14, 38, 109, 256
FaiI	YATR	9 cut(s)	12, 36, 107, 113, 115, 176, 189, 195, 254
FatI	CATG	4 cut(s)	10, 34, 105, 252
FbaI	TGATCA	1 cut(s)	249
GlaI	GCGC	2 cut(s)	161, 203
HaeII	RGCGCY	2 cut(s)	163, 205
HhaI	GCGC	2 cut(s)	162, 204
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	14, 38, 109, 256
Hin6I	GCGC	2 cut(s)	160, 202
HinP1I	GCGC	2 cut(s)	160, 202
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	3 cut(s)	45, 59, 120
HpyAV	CCTTC	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	20
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	14, 38, 109, 256
HspAI	GCGC	2 cut(s)	160, 202
KasI	GGCGCC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	231, 249
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	87, 165, 192, 260
LweI	GCATC	2 cut(s)	7, 134
MaeII	ACGT	1 cut(s)	29
MalI	GATC	2 cut(s)	233, 251
MboI	GATC	2 cut(s)	231, 249
MboII	GAAGA	2 cut(s)	26, 47
MluCI	AATT	1 cut(s)	236
MluI	ACGCGT	1 cut(s)	142
Mly113I	GGCGCC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	91, 149, 215
MseI	TTAA	2 cut(s)	26, 279
MslI	CAYNNNNRTG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	144
NarI	GGCGCC	1 cut(s)	160
NdeII	GATC	2 cut(s)	231, 249
NlaIII	CATG	4 cut(s)	14, 38, 109, 256
NlaIV	GGNNCC	2 cut(s)	161, 214
PaeR7I	CTCGAG	1 cut(s)	45
PluTI	GGCGCC	1 cut(s)	163
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	2 cut(s)	161, 214
RsaI	GTAC	2 cut(s)	9, 32
RsaNI	GTAC	2 cut(s)	8, 31
RseI	CAYNNNNRTG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	26, 279
Sau3AI	GATC	2 cut(s)	231, 249
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	3 cut(s)	32, 181, 222
SfaNI	GCATC	2 cut(s)	7, 134
SfoI	GGCGCC	1 cut(s)	161
Sfr274I	CTCGAG	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	236
SspDI	GGCGCC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	46
TasI	AATT	1 cut(s)	236
TatI	WGTACW	1 cut(s)	7
Tru1I	TTAA	2 cut(s)	26, 279
Tru9I	TTAA	2 cut(s)	26, 279
TspDTI	ATGAA	3 cut(s)	27, 98, 122
XapI	RAATTY	1 cut(s)	236
XhoI	CTCGAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.