Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Reverse (-)

64497972 .. 64502487

Gene Structure 4516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00128750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGCTAAAGGAGTTGGTTCACTCTGTCTTTGGGCATTAAGAAGAAACTCGATGGAGATTACGAGTCAATACTTATGGTTTAGTTGTATTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGACTAGATTACATTCCAAGCCAAATCTAAATAGCAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

69

Amino Acids

7.86

Weight (kDa)

9.94

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	96
AcyI	GRCGYC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	99, 141
BanI	GGYRCC	1 cut(s)	96
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	117
BfaI	CTAG	1 cut(s)	171
BfoI	RGCGCY	2 cut(s)	100, 142
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	2 cut(s)	98, 151
BmrFI	CCNGG	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse3DI	GCAATG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	98, 151
BspT107I	GGYRCC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	97
BstH2I	RGCGCY	2 cut(s)	100, 142
BstHHI	GCGC	2 cut(s)	99, 141
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	115
CfoI	GCGC	2 cut(s)	99, 141
CviJI	RGCY	3 cut(s)	5, 152, 187
CviKI_1	RGCY	3 cut(s)	5, 152, 187
DinI	GGCGCC	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	153
EgeI	GGCGCC	1 cut(s)	98
EheI	GGCGCC	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	153
FaiI	YATR	4 cut(s)	76, 113, 126, 132
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	2 cut(s)	98, 140
HaeII	RGCGCY	2 cut(s)	100, 142
HhaI	GCGC	2 cut(s)	99, 141
Hin1I	GRCGYC	1 cut(s)	97
Hin6I	GCGC	2 cut(s)	97, 139
HinP1I	GCGC	2 cut(s)	97, 139
HinfI	GANTC	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	20
Hpy8I	GTNNAC	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	97
HspAI	GCGC	2 cut(s)	97, 139
KasI	GGCGCC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	149
LpnPI	CCDG	2 cut(s)	102, 129
MaeI	CTAG	1 cut(s)	171
MboII	GAAGA	1 cut(s)	54
Mly113I	GGCGCC	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	86, 152
MseI	TTAA	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	117
MvaI	CCWGG	1 cut(s)	117
NarI	GGCGCC	1 cut(s)	97
NlaIV	GGNNCC	2 cut(s)	98, 151
PleI	GAGTC	1 cut(s)	72
PluTI	GGCGCC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	98, 151
SaqAI	TTAA	1 cut(s)	38
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	2 cut(s)	118, 159
SfoI	GGCGCC	1 cut(s)	98
SgeI	CNNG	7 cut(s)	61, 75, 128, 129, 166, 183, 196
SspDI	GGCGCC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	171
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	153
TaqI	TCGA	1 cut(s)	50
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.