Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

51212195 .. 51224414

Gene Structure 12220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTCCAAACAAAGAGGCAGCTGCATAGGTGGAGGGCGCCAATACATTGATATACCTGGACAATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGGCTCCAGCTATGAAAATTATAGGAAAGGTAAAGACGAAGTCAACACCATCGAATCACTCATTTGGTGGTGTTCCTTTTGATCTGCTTCTATCGCTTCTAATTGGACGGCAAGTCTCCAGGCCTGCTAGATTATTTACGAGAGAGTATCTCGTACGGGGTGGCAACAATTTCGAGGTAGCTGAATTGCGTGATCTTATCGACCAACTTACCTTTAACATGCTCAATATGAAGGAACAAAATGGACTATTGAAGGCTCAAAATGGAATGTTTATTGAGGCAATCTCCCTGGCAGATAAAGTGAGGATGACTTCCCCCATCCTAGCACCAACTGCTAAGTCTTTGCTTGAGCTCAATCCTATCTCCAAGACTCTCTATAAAAGCAAGCACAATGCTAGAGTTCAGGGGACGGAGAAAACACATCAAGAGGAAAGGCGAAGCCCTGCTGCAAAGGAGAGAATAAGTGTTCAGCAACTTTGTTCGAAGGAGAAGCCCGGAAGCAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

205

Amino Acids

22.87

Weight (kDa)

10.21

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	361
AhdI	GACNNNNNGTC	1 cut(s)	221
AjnI	CCWGG	3 cut(s)	58, 227, 396
AluBI	AGCT	4 cut(s)	24, 119, 290, 460
AluI	AGCT	4 cut(s)	24, 119, 290, 460
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	230
ApeKI	GCWGC	3 cut(s)	21, 24, 554
AspLEI	GCGC	2 cut(s)	42, 84
AsuC2I	CCSGG	1 cut(s)	603
AsuII	TTCGAA	1 cut(s)	590
BanI	GGYRCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	3 cut(s)	11, 33, 541
BccI	CCATC	2 cut(s)	166, 434
BceAI	ACGGC	1 cut(s)	233
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	3 cut(s)	60, 229, 398
BcnI	CCSGG	1 cut(s)	603
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	3 cut(s)	237, 431, 504
BfoI	RGCGCY	2 cut(s)	43, 85
BisI	GCNGC	3 cut(s)	22, 25, 555
BlsI	GCNGC	3 cut(s)	23, 26, 556
Bme1390I	CCNGG	4 cut(s)	60, 229, 398, 603
BmeRI	GACNNNNNGTC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	41, 94, 114
BmrFI	CCNGG	4 cut(s)	60, 229, 398, 603
BplI	GAGNNNNNCTC	4 cut(s)	243, 275, 377, 409
BpmI	CTGGAG	2 cut(s)	99, 211
Bpu14I	TTCGAA	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	603
BsaHI	GRCGYC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	96, 396
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
BseBI	CCWGG	3 cut(s)	60, 229, 398
BseDI	CCNNGG	2 cut(s)	96, 396
BseGI	GGATG	2 cut(s)	420, 426
BseXI	GCAGC	3 cut(s)	11, 33, 541
BshFI	GGCC	1 cut(s)	232
BshNI	GGYRCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	1 cut(s)	603
BsiWI	CGTACG	1 cut(s)	262
BslFI	GGGAC	1 cut(s)	529
BsmAI	GTCTC	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	529
BsnI	GGCC	1 cut(s)	232
Bsp119I	TTCGAA	1 cut(s)	590
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	2 cut(s)	190, 301
BspANI	GGCC	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	41, 94, 114
BspT104I	TTCGAA	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	96, 396
BssMI	GATC	2 cut(s)	190, 301
BssNI	GRCGYC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	60, 229, 398
BstACI	GRCGYC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstBI	TTCGAA	1 cut(s)	590
BstC8I	GCNNGC	2 cut(s)	234, 494
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	420, 426
BstH2I	RGCGCY	2 cut(s)	43, 85
BstHHI	GCGC	2 cut(s)	42, 84
BstKTI	GATC	2 cut(s)	193, 304
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	2 cut(s)	190, 301
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 440
BstNI	CCWGG	3 cut(s)	60, 229, 398
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	58, 227, 396, 601
BstV1I	GCAGC	3 cut(s)	11, 33, 541
BsuRI	GGCC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	420, 426
Cac8I	GCNNGC	2 cut(s)	234, 494
CfoI	GCGC	2 cut(s)	42, 84
Csp6I	GTAC	1 cut(s)	263
CviAII	CATG	1 cut(s)	328
CviQI	GTAC	1 cut(s)	263
DdeI	CTNAG	1 cut(s)	444
DinI	GGCGCC	1 cut(s)	41
DpnI	GATC	2 cut(s)	192, 303
DpnII	GATC	2 cut(s)	190, 301
DriI	GACNNNNNGTC	1 cut(s)	221
Eam1105I	GACNNNNNGTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	460
EcoICRI	GAGCTC	1 cut(s)	460
EcoRII	CCWGG	3 cut(s)	58, 227, 396
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	41
EheI	GGCGCC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	331
FaiI	YATR	9 cut(s)	29, 56, 69, 75, 122, 131, 329, 338, 486
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	22, 25, 555
FokI	GGATG	2 cut(s)	413, 427
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	22, 25, 555
FspBI	CTAG	3 cut(s)	237, 431, 504
GlaI	GCGC	2 cut(s)	41, 83
GluI	GCNGC	3 cut(s)	22, 25, 555
GsuI	CTGGAG	2 cut(s)	99, 211
HaeII	RGCGCY	2 cut(s)	43, 85
HaeIII	GGCC	1 cut(s)	232
HapII	CCGG	1 cut(s)	603
HhaI	GCGC	2 cut(s)	42, 84
Hin1I	GRCGYC	1 cut(s)	40
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	2 cut(s)	40, 82
HinP1I	GCGC	2 cut(s)	40, 82
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	163, 478
HpaII	CCGG	1 cut(s)	603
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	1 cut(s)	153
HpyAV	CCTTC	3 cut(s)	334, 355, 586
HpyCH4V	TGCA	2 cut(s)	27, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 440
HpyF3I	CTNAG	1 cut(s)	444
Hsp92I	GRCGYC	1 cut(s)	40
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	2 cut(s)	40, 82
KasI	GGCGCC	1 cut(s)	39
Kzo9I	GATC	2 cut(s)	190, 301
LmnI	GCTCC	2 cut(s)	92, 118
Lsp1109I	GCAGC	3 cut(s)	11, 33, 541
MaeI	CTAG	3 cut(s)	237, 431, 504
MalI	GATC	2 cut(s)	192, 303
MboI	GATC	2 cut(s)	190, 301
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	4 cut(s)	126, 210, 277, 293
Mly113I	GGCGCC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	472
MnlI	CCTC	7 cut(s)	11, 29, 95, 277, 379, 405, 529
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	24
MspI	CCGG	1 cut(s)	603
MspR9I	CCNGG	4 cut(s)	60, 229, 398, 603
MvaI	CCWGG	3 cut(s)	60, 229, 398
MwoI	GCNNNNNNNGC	2 cut(s)	202, 440
NarI	GGCGCC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	603
NdeII	GATC	2 cut(s)	190, 301
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	3 cut(s)	41, 94, 114
NspI	RCATGY	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	590
PceI	AGGCCT	1 cut(s)	232
PfeI	GAWTC	1 cut(s)	163
Pfl23II	CGTACG	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	23, 26, 556
PleI	GAGTC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	472
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	3 cut(s)	58, 227, 396
PspGI	CCWGG	3 cut(s)	58, 227, 396
PspLI	CGTACG	1 cut(s)	262
PspN4I	GGNNCC	3 cut(s)	41, 94, 114
PsyI	GACNNNGTC	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	264
RsaNI	GTAC	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	3 cut(s)	22, 25, 555
Sau3AI	GATC	2 cut(s)	190, 301
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	4 cut(s)	60, 229, 398, 603
SduI	GDGCHC	1 cut(s)	462
SfoI	GGCGCC	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	4 cut(s)	126, 210, 277, 293
SseBI	AGGCCT	1 cut(s)	232
SspDI	GGCGCC	1 cut(s)	39
SspMI	CTAG	3 cut(s)	237, 431, 504
SstI	GAGCTC	1 cut(s)	462
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	4 cut(s)	58, 227, 396, 601
StyI	CCWWGG	1 cut(s)	96
TaqI	TCGA	4 cut(s)	161, 282, 309, 590
TasI	AATT	4 cut(s)	126, 210, 277, 293
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	3 cut(s)	21, 24, 554
TspDTI	ATGAA	2 cut(s)	137, 353
TspGWI	ACGGA	1 cut(s)	533
Tth111I	GACNNNGTC	1 cut(s)	148
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	3 cut(s)	237, 431, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.