Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

20935431 .. 20937840

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g21480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGGCCTCTACAACTGCAACTCTTTCGTTATGCTCTTCGTTCGCAACCCATTGCAAAATCTCGCAAAATCTTCAAACTCCGTCAACCTATTTCAGCTTTCCGTCTCTCTCTTTGTCTTCTTCCCACAAGCTGTCTTCTTGCTCTTCACGGCGACCCACGTTCCCGCTTCTGACCAAGTCGTCGGAGTCGGATTCCGCCGTGGTCGTCGAGGCCGAGTTTCAAGCTCCCGAGCCGGAGGCTGGACCCGATGATTCGGAGCCGGCGGCCTTGCAAGTCGTGGAAACCCCTTCGTCGGAGGCCCCAAAACGCGAGCAGCTGTTCGCTGTTGTTATGATCGGTGGGCGCCAGTACATTGTCATTCCTGGACGATTTATCTATACTCAGCGGCTGAAAGGCGCTAATGTCAACGACAAGATTGTGCTCAACAAAGTGTTGCTGGTGGGGACTAAAACAAGTACGTACATTGGAAAACCAGTGGTGACAAATGCCGCTGTACACGCTGTCGTTGAAGAGCAGGGACTTAATGACAAAGTGGTTGTCTTCAAGTATAAAAAGAAGAAAAATTATAGGAGAAACATCGGTCACCGACAGCCCAATACGCGCATAAGGATAACAGCGGTCACGGGCTACCAAGACTATCCAGCAGTTACCCTTGAGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

222

Amino Acids

24.14

Weight (kDa)

9.42

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	345
AccII	CGCG	2 cut(s)	312, 604
AciI	CCGC	7 cut(s)	5, 167, 198, 266, 388, 492, 620
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	4 cut(s)	353, 460, 464, 498
AfiI	CCNNNNNNNGG	2 cut(s)	242, 295
AgsI	TTSAA	4 cut(s)	77, 224, 512, 547
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	4 cut(s)	99, 133, 227, 319
AluI	AGCT	4 cut(s)	99, 133, 227, 319
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	111
AlwNI	CAGNNNCTG	1 cut(s)	391
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	4 cut(s)	6, 213, 267, 300
ApeKI	GCWGC	1 cut(s)	316
ArsI	GACNNNNNNTTYG	2 cut(s)	525, 557
AspLEI	GCGC	3 cut(s)	348, 401, 606
AspS9I	GGNCC	2 cut(s)	245, 301
AsuHPI	GGTGA	2 cut(s)	493, 578
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	345
BbsI	GAAGAC	3 cut(s)	111, 129, 535
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	167, 185
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	111
BfoI	RGCGCY	2 cut(s)	349, 402
BisI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
BlsI	GCNGC	5 cut(s)	7, 268, 318, 390, 493
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	245, 301
BmiI	GGNNCC	4 cut(s)	247, 261, 303, 347
BmrFI	CCNGG	1 cut(s)	366
BpiI	GAAGAC	3 cut(s)	111, 129, 535
BsaAI	YACGTR	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 295
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	349, 476
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	242, 295
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	2 cut(s)	349, 476
BseXI	GCAGC	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	312, 604
BshFI	GGCC	4 cut(s)	8, 215, 269, 302
BshNI	GGYRCC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	236, 263
BslFI	GGGAC	2 cut(s)	460, 534
BslI	CCNNNNNNNGG	2 cut(s)	242, 295
BsmAI	GTCTC	1 cut(s)	111
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	460, 534
BsnI	GGCC	4 cut(s)	8, 215, 269, 302
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	7 cut(s)	5, 167, 198, 266, 388, 492, 620
BspANI	GGCC	4 cut(s)	8, 215, 269, 302
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	2 cut(s)	312, 604
BspLI	GGNNCC	4 cut(s)	247, 261, 303, 347
BspQI	GCTCTTC	3 cut(s)	43, 151, 507
BspT107I	GGYRCC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	349, 476
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	3 cut(s)	43, 151, 507
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	264, 314
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	201
BstEII	GGTNACC	1 cut(s)	584
BstFNI	CGCG	2 cut(s)	312, 604
BstH2I	RGCGCY	2 cut(s)	349, 402
BstHHI	GCGC	3 cut(s)	348, 401, 606
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 601
BstNI	CCWGG	1 cut(s)	366
BstPI	GGTNACC	1 cut(s)	584
BstSCI	CCNGG	1 cut(s)	364
BstSNI	TACGTA	1 cut(s)	462
BstUI	CGCG	2 cut(s)	312, 604
BstV1I	GCAGC	1 cut(s)	328
BstV2I	GAAGAC	3 cut(s)	111, 129, 535
BsuRI	GGCC	4 cut(s)	8, 215, 269, 302
BtgI	CCRYGG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	264, 314
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	3 cut(s)	348, 401, 606
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	245, 301
Csp6I	GTAC	4 cut(s)	352, 459, 463, 497
CviQI	GTAC	4 cut(s)	352, 459, 463, 497
DdeI	CTNAG	1 cut(s)	384
DinI	GGCGCC	1 cut(s)	347
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DrdI	GACNNNNNNGTC	1 cut(s)	181
DseDI	GACNNNNNNGTC	1 cut(s)	181
Eam1104I	CTCTTC	3 cut(s)	43, 151, 507
EarI	CTCTTC	3 cut(s)	43, 151, 507
EciI	GGCGGA	1 cut(s)	187
Eco105I	TACGTA	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	230
Eco91I	GGTNACC	1 cut(s)	584
EcoO109I	RGGNCCY	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	364
EgeI	GGCGCC	1 cut(s)	347
EheI	GGCGCC	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	111
FaiI	YATR	6 cut(s)	34, 335, 381, 552, 570, 608
FaqI	GGGAC	2 cut(s)	460, 534
FauI	CCCGC	1 cut(s)	174
Fnu4HI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
Fsp4HI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
GlaI	GCGC	3 cut(s)	347, 400, 605
GluI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
HaeII	RGCGCY	2 cut(s)	349, 402
HaeIII	GGCC	4 cut(s)	8, 215, 269, 302
HapII	CCGG	2 cut(s)	236, 263
HhaI	GCGC	3 cut(s)	348, 401, 606
Hin1I	GRCGYC	1 cut(s)	346
Hin6I	GCGC	3 cut(s)	346, 399, 604
HinP1I	GCGC	3 cut(s)	346, 399, 604
HincII	GTYRAC	2 cut(s)	87, 409
HindII	GTYRAC	2 cut(s)	87, 409
HinfI	GANTC	4 cut(s)	188, 194, 254, 659
HpaII	CCGG	2 cut(s)	236, 263
HphI	GGTGA	2 cut(s)	493, 578
Hpy166II	GTNNAC	3 cut(s)	87, 409, 499
Hpy188I	TCNGA	5 cut(s)	174, 187, 193, 259, 298
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	3 cut(s)	87, 409, 499
Hpy99I	CGWCG	3 cut(s)	187, 212, 298
HpyAV	CCTTC	1 cut(s)	300
HpyCH4IV	ACGT	2 cut(s)	161, 461
HpyCH4V	TGCA	3 cut(s)	20, 57, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 601
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	2 cut(s)	161, 461
Hsp92I	GRCGYC	1 cut(s)	346
HspAI	GCGC	3 cut(s)	346, 399, 604
KasI	GGCGCC	1 cut(s)	345
KroI	GCCGGC	1 cut(s)	262
KroNI	GCCGGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	336
LguI	GCTCTTC	3 cut(s)	43, 151, 507
LmnI	GCTCC	2 cut(s)	232, 259
Lsp1109I	GCAGC	1 cut(s)	328
MaeII	ACGT	2 cut(s)	161, 461
MaeIII	GTNAC	4 cut(s)	481, 584, 622, 649
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	9 cut(s)	30, 65, 111, 114, 129, 138, 524, 535, 571
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	1 cut(s)	565
Mly113I	GGCGCC	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	3 cut(s)	165, 171, 276
MnlI	CCTC	4 cut(s)	19, 205, 232, 292
MroNI	GCCGGC	1 cut(s)	262
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	4 cut(s)	319, 388, 494, 620
MspI	CCGG	2 cut(s)	236, 263
MspR9I	CCNGG	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	2 cut(s)	312, 604
MwoI	GCNNNNNNNGC	2 cut(s)	500, 601
NaeI	GCCGGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	346
NdeII	GATC	1 cut(s)	336
NgoMIV	GCCGGC	1 cut(s)	262
NlaIV	GGNNCC	4 cut(s)	247, 261, 303, 347
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	3 cut(s)	481, 584, 622
PciSI	GCTCTTC	3 cut(s)	43, 151, 507
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	194, 254
PflFI	GACNNNGTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	364
PkrI	GCNGC	5 cut(s)	7, 268, 318, 390, 493
PleI	GAGTC	1 cut(s)	196
PluTI	GGCGCC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	196
Ppu21I	YACGTR	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	247, 261, 303, 347
PspPI	GGNCC	2 cut(s)	245, 301
PstNI	CAGNNNCTG	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	319
RsaI	GTAC	4 cut(s)	353, 460, 464, 498
RsaNI	GTAC	4 cut(s)	352, 459, 463, 497
SapI	GCTCTTC	3 cut(s)	43, 151, 507
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	5 cut(s)	6, 267, 317, 389, 492
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	2 cut(s)	245, 301
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	7 cut(s)	92, 101, 135, 164, 229, 321, 464
SfoI	GGCGCC	1 cut(s)	347
SinI	GGWCC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
SnaBI	TACGTA	1 cut(s)	462
Sse9I	AATT	1 cut(s)	565
SsiI	CCGC	7 cut(s)	5, 167, 198, 266, 388, 492, 620
SspDI	GGCGCC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	364
TaiI	ACGT	2 cut(s)	164, 464
TaqI	TCGA	1 cut(s)	210
TaqII	GACCGA	1 cut(s)	572
TasI	AATT	1 cut(s)	565
TatI	WGTACW	2 cut(s)	351, 496
TauI	GCSGC	4 cut(s)	8, 269, 391, 494
TfiI	GAWTC	2 cut(s)	194, 254
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	3 cut(s)	481, 584, 622
TseI	GCWGC	1 cut(s)	316
Tsp45I	GTSAC	3 cut(s)	481, 584, 622
TspGWI	ACGGA	2 cut(s)	72, 93
TspRI	CASTG	1 cut(s)	483
Tth111I	GACNNNGTC	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.