Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0004346

Physical Location & Seq

Genomic Coordinates Forward (+)

37952335 .. 37956310

Gene Structure 3976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGTCGTCTGCAACTCTTTCCTTGCTGTGCTCCTCCTTCGCATCCCATTGCAAAATCTCACCTCCCGCCACAACGTGCCTTTCTCAATTCAACTCCAATCTCACCTTCCTCTCCCTCTCTTCTTCTTCGTCTTCGCCGCACAAGCTCTCCTCCTCTCCGCGTCCCACATTCCCTCTCCTCCCCAAGTCGTCGGAGATTGACTCCGCCGTCCTCGAGGCCGAGCTTCAAGCTCCCGAGCCTGACGCCGAACCTCTTGCTTCGGAGGAGCCTGCCCCCGCCTCCTTGGAACTTGCTGAATCCTCCGCGACGGAGCCAGCCCCAAAACGCGAGGAGATTTTCGCTGTTGTTATGATTGGAGGGCGCCAATACATTGTTATACCTGGACGATATATCTATACACAGCGCCTCAAAGGAGCCAAGGTCAATGATAAGGTTGTTCTGAACAAGGTGCTGCTTGTGGGAACAAAAACAACTACCTACATTGGAAAACCAATAGTGACAAATGCTGCTATACATGCTGTAGTTGAAGAGCAAGGACTGAATGACAAAGTGGTTGTCTTCAAGTATAAGAAGAAGAAAAATTATCGGAGAAACATTGGTCACCGACAGCCAAATTCACGCATAAGGATAACAGCTATCACCGGCTATCAAGACTATCCAGCAGTTACCCTTGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

227

Amino Acids

24.63

Weight (kDa)

9.18

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L21p	PF00829	114 - 214	4.6e-30	Ribosomal prokaryotic L21 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004346)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35680
fragaria_vesca	FvH4_5g27380
malus_domestica	MD08G1247900.v1.1 MD15G1442600.v1.1
prunus_persica	Prupe.3G136100_v2.0.a1
pyrus_communis	pycom08g21480 pycom15g39050
rosa_chinensis	RchiOBHm_Chr5g0043481 RchiOBHm_Chr7g0218651
rosa_laevigata	RLG00000002331
rosa_multiflora	Rmu_sc0001301.1_g000017
rosa_roxburghii	Rroxscaffold_1G00051400 Rroxscaffold_2G00128750 Rroxscaffold_7G00200720 Rroxscaffold_7G00202810
rosa_rugosa	Rorug06G0215900 Rorug07G0179100 Rorug07G0179100 Rorug07G0206100
rosa_samantha	Rh1AG200000 Rh4DG023700 Rh5BG298400 Rh5BG342700 Rh5CG562100 Rh5DG307700 Rh7AG320200 Rh7BG313000 Rh7CG337100 Rh7DG319200
rosa_wichuraiana	Rw4G018500 Rw7G026880 Rw7G027270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	209
AbsI	CCTCGAGG	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	363
AccII	CGCG	3 cut(s)	163, 308, 330
AciI	CCGC	6 cut(s)	69, 140, 161, 207, 279, 306
AcsI	RAATTY	1 cut(s)	616
AcyI	GRCGYC	3 cut(s)	5, 246, 364
AdeI	CACNNNGTG	1 cut(s)	78
AgsI	TTSAA	5 cut(s)	94, 230, 530, 565, 677
AjnI	CCWGG	1 cut(s)	382
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	4 cut(s)	148, 226, 233, 638
AluI	AGCT	4 cut(s)	148, 226, 233, 638
Alw21I	GWGCWC	1 cut(s)	35
Ama87I	CYCGRG	2 cut(s)	215, 236
AoxI	GGCC	1 cut(s)	219
ApeKI	GCWGC	2 cut(s)	454, 509
ApoI	RAATTY	1 cut(s)	616
ArsI	GACNNNNNNTTYG	2 cut(s)	543, 575
AspLEI	GCGC	2 cut(s)	366, 408
AsuHPI	GGTGA	4 cut(s)	54, 97, 596, 634
AvaI	CYCGRG	2 cut(s)	215, 236
BanI	GGYRCC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	126, 553
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	441, 496
BceAI	ACGGC	1 cut(s)	194
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciT130I	CCWGG	1 cut(s)	384
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	2 cut(s)	367, 409
BisI	GCNGC	3 cut(s)	140, 455, 510
BlsI	GCNGC	3 cut(s)	141, 456, 511
Bme1390I	CCNGG	1 cut(s)	384
BmeT110I	CYCGRG	2 cut(s)	215, 236
BmiI	GGNNCC	4 cut(s)	270, 315, 365, 418
BmrFI	CCNGG	1 cut(s)	384
BmsI	GCATC	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	126, 553
BplI	GAGNNNNNCTC	2 cut(s)	188, 220
BsaHI	GRCGYC	3 cut(s)	5, 246, 364
BsaJI	CCNNGG	2 cut(s)	285, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 408, 438
Bse118I	RCCGGY	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	285, 420
BseGI	GGATG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	49
BseRI	GAGGAG	6 cut(s)	25, 142, 145, 170, 281, 347
BseXI	GCAGC	2 cut(s)	441, 496
Bsh1236I	CGCG	3 cut(s)	163, 308, 330
BshFI	GGCC	1 cut(s)	221
BshNI	GGYRCC	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	2 cut(s)	215, 236
BsiSI	CCGG	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	221
BsoBI	CYCGRG	2 cut(s)	215, 236
Bsp1286I	GDGCHC	1 cut(s)	35
BspACI	CCGC	6 cut(s)	69, 140, 161, 207, 279, 306
BspANI	GGCC	1 cut(s)	221
BspFNI	CGCG	3 cut(s)	163, 308, 330
BspLI	GGNNCC	4 cut(s)	270, 315, 365, 418
BspQI	GCTCTTC	1 cut(s)	525
BspT107I	GGYRCC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	285, 420
BssNI	GRCGYC	3 cut(s)	5, 246, 364
BssT1I	CCWWGG	2 cut(s)	285, 420
Bst2UI	CCWGG	1 cut(s)	384
Bst6I	CTCTTC	2 cut(s)	127, 525
BstACI	GRCGYC	3 cut(s)	5, 246, 364
BstC8I	GCNNGC	2 cut(s)	273, 318
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	1 cut(s)	44
BstFNI	CGCG	3 cut(s)	163, 308, 330
BstH2I	RGCGCY	2 cut(s)	367, 409
BstHHI	GCGC	2 cut(s)	366, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 145, 518
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	521
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	3 cut(s)	163, 308, 330
BstV1I	GCAGC	2 cut(s)	441, 496
BstV2I	GAAGAC	2 cut(s)	126, 553
BsuRI	GGCC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	44
Cac8I	GCNNGC	2 cut(s)	273, 318
CfoI	GCGC	2 cut(s)	366, 408
Cfr10I	RCCGGY	1 cut(s)	644
CseI	GACGC	2 cut(s)	152, 254
CviAII	CATG	1 cut(s)	518
DinI	GGCGCC	1 cut(s)	365
DraIII	CACNNNGTG	1 cut(s)	78
DrdI	GACNNNNNNGTC	1 cut(s)	209
DseDI	GACNNNNNNGTC	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	127, 525
EarI	CTCTTC	2 cut(s)	127, 525
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	2 cut(s)	285, 420
Eco88I	CYCGRG	2 cut(s)	215, 236
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	285, 420
EgeI	GGCGCC	1 cut(s)	365
EheI	GGCGCC	1 cut(s)	365
ErhI	CCWWGG	2 cut(s)	285, 420
FaeI	CATG	1 cut(s)	521
FaiI	YATR	9 cut(s)	353, 380, 393, 399, 515, 519, 570, 626, 682
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	1 cut(s)	517
FauI	CCCGC	2 cut(s)	76, 286
Fnu4HI	GCNGC	3 cut(s)	140, 455, 510
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	140, 455, 510
GlaI	GCGC	2 cut(s)	365, 407
GluI	GCNGC	3 cut(s)	140, 455, 510
HaeII	RGCGCY	2 cut(s)	367, 409
HaeIII	GGCC	1 cut(s)	221
HapII	CCGG	1 cut(s)	645
HgaI	GACGC	2 cut(s)	152, 254
HhaI	GCGC	2 cut(s)	366, 408
Hin1I	GRCGYC	3 cut(s)	5, 246, 364
Hin1II	CATG	1 cut(s)	521
Hin6I	GCGC	2 cut(s)	364, 406
HinP1I	GCGC	2 cut(s)	364, 406
HinfI	GANTC	3 cut(s)	203, 299, 677
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	4 cut(s)	54, 97, 596, 634
Hpy188I	TCNGA	4 cut(s)	196, 265, 444, 591
Hpy188III	TCNNGA	2 cut(s)	236, 653
Hpy99I	CGWCG	3 cut(s)	10, 196, 313
HpyAV	CCTTC	2 cut(s)	49, 118
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	2 cut(s)	14, 54
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 145, 518
HpySE526I	ACGT	1 cut(s)	77
Hsp92I	GRCGYC	3 cut(s)	5, 246, 364
Hsp92II	CATG	1 cut(s)	521
HspAI	GCGC	2 cut(s)	364, 406
KasI	GGCGCC	1 cut(s)	363
LguI	GCTCTTC	1 cut(s)	525
LmnI	GCTCC	5 cut(s)	38, 238, 268, 313, 416
LpnPI	CCDG	7 cut(s)	255, 285, 330, 369, 396, 658, 675
Lsp1109I	GCAGC	2 cut(s)	441, 496
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	3 cut(s)	499, 602, 667
MboII	GAAGA	8 cut(s)	114, 117, 120, 126, 542, 553, 586, 589
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	3 cut(s)	89, 583, 616
Mly113I	GGCGCC	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	174
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	3 cut(s)	163, 308, 330
MwoI	GCNNNNNNNGC	3 cut(s)	11, 145, 518
NarI	GGCGCC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	4 cut(s)	270, 315, 365, 418
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	499, 602
NspI	RCATGY	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	215
PciSI	GCTCTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	299, 677
PkrI	GCNGC	3 cut(s)	141, 456, 511
PleI	GAGTC	1 cut(s)	197
PluTI	GGCGCC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	382
PspEI	GGTNACC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	4 cut(s)	270, 315, 365, 418
PspXI	VCTCGAGB	1 cut(s)	215
SapI	GCTCTTC	1 cut(s)	525
SatI	GCNGC	3 cut(s)	140, 455, 510
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	522
SfoI	GGCGCC	1 cut(s)	365
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	89, 583, 616
SsiI	CCGC	6 cut(s)	69, 140, 161, 207, 279, 306
SspDI	GGCGCC	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	285, 420
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	89, 583, 616
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	299, 677
TseFI	GTSAC	2 cut(s)	499, 602
TseI	GCWGC	2 cut(s)	454, 509
Tsp45I	GTSAC	2 cut(s)	499, 602
TspGWI	ACGGA	1 cut(s)	326
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	1 cut(s)	521
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.