Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Reverse (-)

20290155 .. 20292131

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAAGAGTCATACTCTGTTTGTAGTCCCAGAAGAATCCTGAGTGTGTCAAAGAAGAGGAGGGAGGCAACAGTGTCCTTTGCCAATCCTGATACTAAGGCTTCTCGGTTTCATGGTCCCAAACCTGCTGAAGTTTATGGCTTTGTGGGTTCTATCACCACTGTTGTGGCCACAGTTATTTTTTTAGTGTGGGCATATGTGCCGGAGTCTTGGCTACATTGGATTGGAATCTTTTACTACCCCAGCAGATATTGGGCATTGGCTGTGCCAGCTTATGCAATGATGACAGTGGTACTGGCATTGGTATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCATCCTCCTTATATACAGTATATGATGAGTTTAGTAGAGATCCTGCAAGCTCTGGTCAAATGACCAGTGATGATCAGCCCATTGAACCCATATCTGATATCAGTATTGACAGAATTAATCATGCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

6.27

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	43 - 158	4.2e-39	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	428
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	272, 393
AluI	AGCT	2 cut(s)	272, 393
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	2 cut(s)	168, 316
AseI	ATTAAT	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	170
BccI	CCATC	1 cut(s)	352
BclI	TGATCA	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BplI	GAGNNNNNCTC	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	300, 408
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	227
BseGI	GGATG	1 cut(s)	344
BseJI	GATNNNNATC	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	2 cut(s)	300, 408
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	170, 318
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	2 cut(s)	12, 102
BsmFI	GGGAC	2 cut(s)	12, 102
BsnI	GGCC	2 cut(s)	170, 318
Bsp143I	GATC	2 cut(s)	382, 415
BspANI	GGCC	2 cut(s)	170, 318
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	118
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	300, 408
BssMI	GATC	2 cut(s)	382, 415
Bst4CI	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	2 cut(s)	270, 391
BstDEI	CTNAG	2 cut(s)	41, 96
BstF5I	GGATG	1 cut(s)	344
BstKTI	GATC	2 cut(s)	385, 418
BstMBI	GATC	2 cut(s)	382, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	170, 318
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	4 cut(s)	78, 159, 294, 415
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	2 cut(s)	270, 391
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	293
CviAII	CATG	4 cut(s)	113, 328, 464, 469
CviJI	RGCY	9 cut(s)	101, 141, 170, 214, 263, 272, 318, 393, 421
CviKI_1	RGCY	9 cut(s)	101, 141, 170, 214, 263, 272, 318, 393, 421
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	2 cut(s)	41, 96
DpnI	GATC	2 cut(s)	384, 417
DpnII	GATC	2 cut(s)	382, 415
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	4 cut(s)	116, 331, 467, 472
FaqI	GGGAC	2 cut(s)	12, 102
FatI	CATG	4 cut(s)	112, 327, 463, 468
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	170, 318
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	4 cut(s)	116, 331, 467, 472
HinfI	GANTC	4 cut(s)	8, 36, 206, 228
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	1 cut(s)	439
Hpy188III	TCNNGA	2 cut(s)	40, 89
Hpy8I	GTNNAC	1 cut(s)	333
HpyCH4III	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
HpyCH4V	TGCA	2 cut(s)	278, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	41, 96
Hsp92II	CATG	4 cut(s)	116, 331, 467, 472
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	382, 415
MalI	GATC	2 cut(s)	384, 417
MboI	GATC	2 cut(s)	382, 415
MboII	GAAGA	3 cut(s)	17, 45, 67
MflI	RGATCY	1 cut(s)	382
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	1 cut(s)	456
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	17, 215
MnlI	CCTC	6 cut(s)	51, 54, 58, 329, 348, 358
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	2 cut(s)	459, 474
MslI	CAYNNNNRTG	1 cut(s)	164
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	382, 415
NlaIII	CATG	4 cut(s)	116, 331, 467, 472
NlaIV	GGNNCC	1 cut(s)	118
OliI	CACNNNNGTG	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	36, 228
PleI	GAGTC	2 cut(s)	16, 214
PpsI	GAGTC	2 cut(s)	16, 214
PshBI	ATTAAT	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	459, 474
Sau3AI	GATC	2 cut(s)	382, 415
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	17, 215
SetI	ASST	3 cut(s)	127, 274, 395
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	456
TaaI	ACNGT	6 cut(s)	73, 163, 175, 289, 314, 361
TasI	AATT	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	36, 228
Tru1I	TTAA	2 cut(s)	459, 474
Tru9I	TTAA	2 cut(s)	459, 474
TscAI	CASTG	4 cut(s)	78, 166, 294, 415
TspDTI	ATGAA	2 cut(s)	101, 316
TspRI	CASTG	4 cut(s)	78, 166, 294, 415
VpaK11BI	GGWCC	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.