Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Reverse (-)

33818107 .. 33818493

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTTGGACCGTCCTCTTGGGAGGACAGCTTTCTGCTCGATATCAGCCTGAAGTCTTGGTGGCGGCCAGATTTCCAAATCCATGTACACAGGATGCAGTTCGGGTGTCCCGAACTCGATTTTGAGGAGAGGCCTGTTGCAACCTTGTTTACAAAGGAGGTTGGGCTCTGTGTTTTCAATAAGGGCGGCGGTTCAGCTGGCTTCAAGTTTGCTTCGTTTCGTCGCGATGGCGCAGTTCCAGGCTATGGTGGCGGTTGTGTTGCAGTCAAGCTAAAGGCAATAGTGGCGCGGCAGGGCGGCCGTGTTGCAGGCCCCGCAATGCTTGTTGCGATGGTTACGGTAGATGCTAGTGATGGGGATGTAAATGCGAGTGGAGGCTGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

128

Amino Acids

13.59

Weight (kDa)

6.71

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccII	CGCG	2 cut(s)	225, 289
AciI	CCGC	7 cut(s)	64, 186, 189, 252, 289, 297, 315
AcoI	YGGCCR	2 cut(s)	65, 298
AcuI	CTGAAG	1 cut(s)	71
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	178, 205
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	30, 197, 271
AluI	AGCT	3 cut(s)	30, 197, 271
AoxI	GGCC	4 cut(s)	65, 131, 298, 310
ApeKI	GCWGC	1 cut(s)	378
AspLEI	GCGC	2 cut(s)	233, 289
AspS9I	GGNCC	2 cut(s)	8, 311
AvaII	GGWCC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	221, 325, 347
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	348
BisI	GCNGC	5 cut(s)	65, 187, 290, 298, 379
BlsI	GCNGC	5 cut(s)	66, 188, 291, 299, 380
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	8, 311
BmiI	GGNNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	84, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	99, 364
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	140
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	365
Bsh1236I	CGCG	2 cut(s)	225, 289
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	4 cut(s)	67, 133, 300, 312
BsiEI	CGRYCG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	4 cut(s)	67, 133, 300, 312
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	85
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	7 cut(s)	64, 186, 189, 252, 289, 297, 315
BspANI	GGCC	4 cut(s)	67, 133, 300, 312
BspFNI	CGCG	2 cut(s)	225, 289
BspLI	GGNNCC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	240
Bst4CI	ACNGT	2 cut(s)	12, 340
BstAUI	TGTACA	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	199, 310
BstF5I	GGATG	2 cut(s)	99, 364
BstFNI	CGCG	2 cut(s)	225, 289
BstHHI	GCGC	2 cut(s)	233, 289
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 284, 314
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	2 cut(s)	225, 289
BstV1I	GCAGC	1 cut(s)	365
BstZI	CGGCCG	1 cut(s)	298
BsuRI	GGCC	4 cut(s)	67, 133, 300, 312
BtgZI	GCGATG	2 cut(s)	240, 344
BtsCI	GGATG	2 cut(s)	99, 364
BtuMI	TCGCGA	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	199, 310
CfoI	GCGC	2 cut(s)	233, 289
Cfr13I	GGNCC	2 cut(s)	8, 311
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	1 cut(s)	83
CviQI	GTAC	1 cut(s)	86
EaeI	YGGCCR	2 cut(s)	65, 298
EagI	CGGCCG	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	298
Eco147I	AGGCCT	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	8
Eco52I	CGGCCG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	84, 246
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	5 cut(s)	65, 187, 290, 298, 379
FokI	GGATG	2 cut(s)	106, 371
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	5 cut(s)	65, 187, 290, 298, 379
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	232, 288
GluI	GCNGC	5 cut(s)	65, 187, 290, 298, 379
HaeIII	GGCC	4 cut(s)	67, 133, 300, 312
HhaI	GCGC	2 cut(s)	233, 289
Hin1II	CATG	1 cut(s)	86
Hin6I	GCGC	2 cut(s)	231, 287
HinP1I	GCGC	2 cut(s)	231, 287
Hpy166II	GTNNAC	2 cut(s)	88, 150
Hpy188III	TCNNGA	3 cut(s)	110, 224, 384
Hpy8I	GTNNAC	2 cut(s)	88, 150
Hpy99I	CGWCG	1 cut(s)	225
HpyCH4III	ACNGT	2 cut(s)	12, 340
HpyCH4V	TGCA	4 cut(s)	97, 140, 263, 308
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 284, 314
Hsp92II	CATG	1 cut(s)	86
HspAI	GCGC	2 cut(s)	231, 287
LpnPI	CCDG	9 cut(s)	62, 76, 81, 147, 183, 225, 252, 278, 294
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	2 cut(s)	84, 334
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	168
MnlI	CCTC	6 cut(s)	16, 25, 118, 123, 151, 368
MspA1I	CMGCKG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MvnI	CGCG	2 cut(s)	225, 289
MwoI	GCNNNNNNNGC	3 cut(s)	249, 284, 314
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	313
NruI	TCGCGA	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	66, 188, 291, 299, 380
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	2 cut(s)	8, 311
PvuII	CAGCTG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SatI	GCNGC	5 cut(s)	65, 187, 290, 298, 379
Sau96I	GGNCC	2 cut(s)	8, 311
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	5 cut(s)	32, 146, 162, 199, 273
SfaNI	GCATC	2 cut(s)	84, 334
SinI	GGWCC	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	7 cut(s)	64, 186, 189, 252, 289, 297, 315
SspMI	CTAG	1 cut(s)	348
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	12, 340
TaqI	TCGA	2 cut(s)	39, 117
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	4 cut(s)	67, 189, 292, 300
TseI	GCWGC	1 cut(s)	378
Van91I	CCANNNNNTGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	8
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.