Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007696.1

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

61135 .. 64293

Gene Structure 3159 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007696.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggaagactcatactctgtttgtagtcccagaagaattctgagtgtgtcaaagaagaggagggaggcaacagtgtcctttgcagatgctgatattaaggcttctgggtttcacggtcccaaacctgctgaagtgtatggctttgtgggttctatcacaactgttgtggctacagttattctcttggtgtgggcatatgtgccagagtcttggctacattggattcgaatcttttactaccccagcaggtattgggcattggctgtgccagcttatgcaatgatgactgtggtactggcattagtatcttactgtggcctcaacttcatgtccacccctccgccatcctccttatatacagtatatgatgaatttagtagagatcctgtaagctctggtcaaatggctggtgatgatcaactcattgaacccatatctgatatcatccttggtcaggctatggtgcttgtgttcttggtcctctggcatgcccttgttgttggattccagcttgtcttggagccgtctatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

177

Amino Acids

19.68

Weight (kDa)

5.24

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	133, 237
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	1 cut(s)	377
AcsI	RAATTY	2 cut(s)	36, 371
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	294
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	428
AluBI	AGCT	3 cut(s)	272, 393, 511
AluI	AGCT	3 cut(s)	272, 393, 511
AlwI	GGATC	1 cut(s)	377
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	316
ApoI	RAATTY	2 cut(s)	36, 371
AspS9I	GGNCC	2 cut(s)	116, 478
AsuHPI	GGTGA	1 cut(s)	422
AsuII	TTCGAA	1 cut(s)	226
AvaII	GGWCC	2 cut(s)	116, 478
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	415
BfmI	CTRYAG	1 cut(s)	171
BfuAI	ACCTGC	2 cut(s)	133, 237
Bme18I	GGWCC	2 cut(s)	116, 478
BmgT120I	GGNCC	2 cut(s)	116, 478
BmiI	GGNNCC	2 cut(s)	118, 522
BmsI	GCATC	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	12
Bpu14I	TTCGAA	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	300
Bse3DI	GCAATG	1 cut(s)	285
Bse8I	GATNNNNATC	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	344, 444
BseJI	GATNNNNATC	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	1 cut(s)	318
BslFI	GGGAC	2 cut(s)	12, 102
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmFI	GGGAC	2 cut(s)	12, 102
BsnI	GGCC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	382, 415
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	118, 522
BspMI	ACCTGC	2 cut(s)	133, 237
BspPI	GGATC	1 cut(s)	377
BspT104I	TTCGAA	1 cut(s)	226
BsrDI	GCAATG	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	300
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	2 cut(s)	382, 415
BssT1I	CCWWGG	1 cut(s)	448
Bst4CI	ACNGT	7 cut(s)	73, 116, 163, 175, 289, 314, 361
Bst6I	CTCTTC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	270, 489
BstDEI	CTNAG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	2 cut(s)	344, 444
BstKTI	GATC	2 cut(s)	385, 418
BstMBI	GATC	2 cut(s)	382, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	382
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	344, 444
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	133, 237
Cac8I	GCNNGC	2 cut(s)	270, 489
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	116, 478
Csp6I	GTAC	1 cut(s)	293
CspCI	CAANNNNNGTGG	2 cut(s)	147, 182
CviAII	CATG	2 cut(s)	328, 488
CviQI	GTAC	1 cut(s)	293
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	2 cut(s)	384, 417
DpnII	GATC	2 cut(s)	382, 415
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	116, 478
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRI	GAATTC	1 cut(s)	36
EcoRV	GATATC	1 cut(s)	442
EcoT14I	CCWWGG	1 cut(s)	448
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	331, 491
FaqI	GGGAC	2 cut(s)	12, 102
FatI	CATG	2 cut(s)	327, 487
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	415
FokI	GGATG	2 cut(s)	331, 431
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	331, 491
HinfI	GANTC	5 cut(s)	8, 206, 223, 228, 504
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	2 cut(s)	42, 439
Hpy8I	GTNNAC	1 cut(s)	333
HpyCH4III	ACNGT	7 cut(s)	73, 116, 163, 175, 289, 314, 361
HpyCH4V	TGCA	2 cut(s)	83, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	331, 491
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	2 cut(s)	382, 415
LmnI	GCTCC	1 cut(s)	520
LweI	GCATC	1 cut(s)	76
MalI	GATC	2 cut(s)	384, 417
MboI	GATC	2 cut(s)	382, 415
MboII	GAAGA	3 cut(s)	17, 45, 67
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	2 cut(s)	36, 371
MlyI	GAGTC	2 cut(s)	2, 215
MmeI	TCCRAC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	51, 54, 58, 329, 348, 358, 491
MseI	TTAA	2 cut(s)	96, 532
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	2 cut(s)	382, 415
NlaIII	CATG	2 cut(s)	331, 491
NlaIV	GGNNCC	2 cut(s)	118, 522
NspI	RCATGY	1 cut(s)	491
NspV	TTCGAA	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	223, 228, 504
PleI	GAGTC	2 cut(s)	2, 214
PpsI	GAGTC	2 cut(s)	2, 214
PspFI	CCCAGC	1 cut(s)	242
PspN4I	GGNNCC	2 cut(s)	118, 522
PspPI	GGNCC	2 cut(s)	116, 478
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	294
RsaNI	GTAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	96, 532
Sau3AI	GATC	2 cut(s)	382, 415
Sau96I	GGNCC	2 cut(s)	116, 478
SchI	GAGTC	2 cut(s)	2, 215
SetI	ASST	5 cut(s)	127, 251, 274, 395, 513
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	226
SinI	GGWCC	2 cut(s)	116, 478
SphI	GCATGC	1 cut(s)	491
Sse9I	AATT	2 cut(s)	36, 371
SsiI	CCGC	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	7 cut(s)	73, 116, 163, 175, 289, 314, 361
TaqI	TCGA	1 cut(s)	226
TasI	AATT	2 cut(s)	36, 371
TfiI	GAWTC	3 cut(s)	223, 228, 504
Tru1I	TTAA	2 cut(s)	96, 532
Tru9I	TTAA	2 cut(s)	96, 532
TscAI	CASTG	1 cut(s)	78
TspDTI	ATGAA	2 cut(s)	316, 384
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	2 cut(s)	116, 478
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	2 cut(s)	36, 371
XceI	RCATGY	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.