RLG00000034992

Phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004032
Physical Location & Seq
Reverse (-)
58743202 .. 58745256
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034992

Sequence Viewer

Length: 441 bp
ATGAGTGTGTCAAAGAAGAGGAGGGCTGCAACAGTGTCTTTTGCAGATCCAGATGTTAAGGCTTCTGGCTTTCATGGTCCCAAACCTGCTGAAGTTTATGGCTTTGTAGGTTCCATCACAACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCATATGTTCCAGAGTCTTGGCTACATTCAATCGGAATCTTTTACTACCCCAGCAGGTACTGGGCATTGGCAGTGCCAGCTTATGCAATGATGACTGTTGTATTAGCATTAGTATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCGTCTTCCTTATATACGGTATATGATGAATTTAGTAGAGATCCTGTAAGCTCTGCTCGAATTGCCAATGATGATCAACCAATTGAACCCATATCCGATATCAGTATTGACAGAATCAATCGTTCCATGTTTGAATAA

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

5.62

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-P PF08510 30 - 145 3e-39 PIG-P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 94, 198
AclWI GGATC 2 cut(s) 41, 338
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 3 cut(s) 183, 389, 437
AluBI AGCT 2 cut(s) 233, 354
AluI AGCT 2 cut(s) 233, 354
AlwI GGATC 2 cut(s) 41, 338
AlwNI CAGNNNCTG 1 cut(s) 213
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 77
AvaII GGWCC 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 122
BclI TGATCA 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 132
BfuAI ACCTGC 2 cut(s) 94, 198
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 2 cut(s) 79, 112
BmrI ACTGGG 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 203
BshFI GGCC 1 cut(s) 279
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 46, 343, 376
BspANI GGCC 1 cut(s) 279
BspLI GGNNCC 2 cut(s) 79, 112
BspMI ACCTGC 2 cut(s) 94, 198
BspPI GGATC 2 cut(s) 41, 338
BsrDI GCAATG 1 cut(s) 246
BsrI ACTGG 1 cut(s) 218
BssMI GATC 3 cut(s) 46, 343, 376
Bst4CI ACNGT 6 cut(s) 34, 124, 136, 250, 275, 322
Bst6I CTCTTC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 49, 346, 379
BstMBI GATC 3 cut(s) 46, 343, 376
BstMWI GCNNNNNNNGC 2 cut(s) 230, 365
BstSFI CTRYAG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 2 cut(s) 46, 343
BstXI CCANNNNNNTGG 1 cut(s) 171
BstYI RGATCY 2 cut(s) 46, 343
BsuRI GGCC 1 cut(s) 279
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 39, 231
BveI ACCTGC 2 cut(s) 94, 198
Cac8I GCNNGC 1 cut(s) 231
CaiI CAGNNNCTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 211
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 3 cut(s) 74, 289, 430
CviJI RGCY 9 cut(s) 26, 62, 69, 102, 131, 175, 233, 279, 354
CviKI_1 RGCY 9 cut(s) 26, 62, 69, 102, 131, 175, 233, 279, 354
CviQI GTAC 1 cut(s) 211
DpnI GATC 3 cut(s) 48, 345, 378
DpnII GATC 3 cut(s) 46, 343, 376
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 403
FaeI CATG 3 cut(s) 77, 292, 433
FaqI GGGAC 1 cut(s) 63
FatI CATG 3 cut(s) 73, 288, 429
FauNDI CATATG 1 cut(s) 157
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 1 cut(s) 279
Hin1II CATG 3 cut(s) 77, 292, 433
HinfI GANTC 3 cut(s) 167, 189, 417
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 188, 400
Hpy188III TCNNGA 2 cut(s) 50, 164
Hpy8I GTNNAC 1 cut(s) 294
HpyCH4III ACNGT 6 cut(s) 34, 124, 136, 250, 275, 322
HpyCH4V TGCA 3 cut(s) 29, 44, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 365
Hsp92II CATG 3 cut(s) 77, 292, 433
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 46, 343, 376
LpnPI CCDG 9 cut(s) 51, 63, 99, 177, 193, 199, 217, 243, 360
Lsp1109I GCAGC 1 cut(s) 13
MalI GATC 3 cut(s) 48, 345, 378
MboI GATC 3 cut(s) 46, 343, 376
MboII GAAGA 2 cut(s) 28, 300
MfeI CAATTG 1 cut(s) 384
MflI RGATCY 2 cut(s) 46, 343
MluCI AATT 3 cut(s) 332, 363, 384
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 12, 15, 290, 309
MseI TTAA 1 cut(s) 57
MunI CAATTG 1 cut(s) 384
MwoI GCNNNNNNNGC 2 cut(s) 230, 365
NdeI CATATG 1 cut(s) 157
NdeII GATC 3 cut(s) 46, 343, 376
NlaIII CATG 3 cut(s) 77, 292, 433
NlaIV GGNNCC 2 cut(s) 79, 112
PfeI GAWTC 2 cut(s) 189, 417
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 203
PspN4I GGNNCC 2 cut(s) 79, 112
PspPI GGNCC 1 cut(s) 77
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 2 cut(s) 46, 343
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 46, 343, 376
Sau96I GGNCC 1 cut(s) 77
SchI GAGTC 1 cut(s) 176
SetI ASST 5 cut(s) 88, 112, 212, 235, 356
SfcI CTRYAG 1 cut(s) 132
SinI GGWCC 1 cut(s) 77
Sse9I AATT 3 cut(s) 332, 363, 384
TaaI ACNGT 6 cut(s) 34, 124, 136, 250, 275, 322
TaqI TCGA 1 cut(s) 361
TasI AATT 3 cut(s) 332, 363, 384
TfiI GAWTC 2 cut(s) 189, 417
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 2 cut(s) 39, 231
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 3 cut(s) 62, 277, 345
TspRI CASTG 2 cut(s) 39, 231
VpaK11BI GGWCC 1 cut(s) 77
XapI RAATTY 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.