Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

17311952 .. 17313461

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGATTCATATTCTGTGTGCAGCCCCAGAAGAATCCTAAGTGTGTCAAAGAAGAGGAGGGCAACTGTGTCATTTGTGGATCCAGATGATAAGGCTTCTGGGTTTCATGGCCCCAAGCCTTCTGAAGTCTATGGCTTTGTTGGTTCCATCACTACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCATATGTTCCAGAGTCTTGGCTGCATTCCATTGGGATCTTTTACTATCCCAGCAGGTATTGGGCATTGGCTGTGCCAGCTTACGCTATGATGACTTTGGTATTAGCTCTGGGGTTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCTTCTTCCTTATATACTGTTTACGATGAATTCAGTAGGGATCCTTTGAGCTCTGCTCCAATTGGTGACGATGATCAGCCTATAGAACCCATATCCGATATCAGCATCGACAGAGTCAATCGTTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

159

Amino Acids

17.64

Weight (kDa)

5.26

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AclWI	GGATC	5 cut(s)	77, 90, 233, 374, 387
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	269, 296, 390
AluI	AGCT	3 cut(s)	269, 296, 390
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	5 cut(s)	77, 90, 233, 374, 387
AoxI	GGCC	2 cut(s)	112, 313
ApeKI	GCWGC	2 cut(s)	24, 211
ApoI	RAATTY	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	416
BamHI	GGATCC	2 cut(s)	82, 379
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	36, 198
BccI	CCATC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	412
BfmI	CTRYAG	2 cut(s)	168, 420
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	2 cut(s)	25, 212
BlsI	GCNGC	2 cut(s)	26, 213
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	84, 115, 148, 381
BmsI	GCATC	1 cut(s)	453
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	36, 198
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	114, 315
BsiHKAI	GWGCWC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	2 cut(s)	114, 315
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	82, 225, 379, 412
BspANI	GGCC	2 cut(s)	114, 315
BspLI	GGNNCC	4 cut(s)	84, 115, 148, 381
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	5 cut(s)	77, 90, 233, 374, 387
BssMI	GATC	4 cut(s)	82, 225, 379, 412
Bst4CI	ACNGT	5 cut(s)	70, 160, 172, 311, 358
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	4 cut(s)	85, 228, 382, 415
BstMBI	GATC	4 cut(s)	82, 225, 379, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	2 cut(s)	168, 420
BstV1I	GCAGC	2 cut(s)	36, 198
BstX2I	RGATCY	3 cut(s)	82, 225, 379
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	3 cut(s)	82, 225, 379
BsuRI	GGCC	2 cut(s)	114, 315
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	110, 325, 466
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	84, 227, 381, 414
DpnII	GATC	4 cut(s)	82, 225, 379, 412
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	3 cut(s)	113, 328, 469
FatI	CATG	3 cut(s)	109, 324, 465
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	25, 212
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	25, 212
GluI	GCNGC	2 cut(s)	25, 212
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	114, 315
Hin1II	CATG	3 cut(s)	113, 328, 469
HinfI	GANTC	4 cut(s)	8, 36, 203, 453
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	330, 361
Hpy188I	TCNGA	2 cut(s)	127, 436
Hpy188III	TCNNGA	2 cut(s)	86, 200
Hpy8I	GTNNAC	2 cut(s)	330, 361
HpyAV	CCTTC	2 cut(s)	132, 351
HpyCH4III	ACNGT	5 cut(s)	70, 160, 172, 311, 358
HpyCH4V	TGCA	2 cut(s)	24, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	113, 328, 469
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	82, 225, 379, 412
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	8 cut(s)	43, 87, 99, 213, 229, 253, 279, 284
Lsp1109I	GCAGC	2 cut(s)	36, 198
LweI	GCATC	1 cut(s)	453
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	84, 227, 381, 414
MboI	GATC	4 cut(s)	82, 225, 379, 412
MboII	GAAGA	3 cut(s)	45, 67, 336
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	3 cut(s)	82, 225, 379
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	368, 399
MlyI	GAGTC	2 cut(s)	212, 462
MnlI	CCTC	4 cut(s)	51, 54, 326, 345
MseI	TTAA	1 cut(s)	471
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	4 cut(s)	82, 225, 379, 412
NlaIII	CATG	3 cut(s)	113, 328, 469
NlaIV	GGNNCC	4 cut(s)	84, 115, 148, 381
NmuCI	GTSAC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	8, 36
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	26, 213
PleI	GAGTC	2 cut(s)	211, 461
PpsI	GAGTC	2 cut(s)	211, 461
Psp124BI	GAGCTC	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	84, 115, 148, 381
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	82, 225, 379
PsyI	GACNNNGTC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	25, 212
Sau3AI	GATC	4 cut(s)	82, 225, 379, 412
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	212, 462
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	4 cut(s)	248, 271, 298, 392
SfaNI	GCATC	1 cut(s)	453
SfcI	CTRYAG	2 cut(s)	168, 420
Sse9I	AATT	2 cut(s)	368, 399
SstI	GAGCTC	1 cut(s)	392
TaaI	ACNGT	5 cut(s)	70, 160, 172, 311, 358
TaqI	TCGA	1 cut(s)	447
TasI	AATT	2 cut(s)	368, 399
TfiI	GAWTC	2 cut(s)	8, 36
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	24, 211
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	98, 313, 381
Tth111I	GACNNNGTC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.