Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

23093627 .. 23096169

Gene Structure 2543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTGTTGTGGTTAAAGAACTGGGATTGAAGGGAAAGAAAGGGAATATAGGGAAATCTGGAATCTCACCAGAAGATCTCGGTCTGTGCAGGCTGGATTTCACGCCAAGCAGTCGATACATGATGGTCGGTGGACACAAGGGCCATCTAGCTATTGTAGACATGAAGCAAATGAGCCTGATCAAACAATTTCAGTGGAAAATTAGATGGCGTTTATTTGCACTTCAAGGTTTGAGTGGAATATGGACTGATTGGAAAATTGCTGATTTTCTTCTCAGGTTAGGGAGACAGTTCTTGCATGATGAGACGTTGTTTGCTGCAGCCCAGAAAAAGTATCCATATATTTATAATCGGGATGGCACTGAACTTCACTGCTTAAAGGAACATGGTGCAGCTTTAAGGCTTTGTTATCTTGAACAACACCGACTATTGGCATCAATAAATGAATATGGTCAGCTTCATTATCAGGATGTAACAGATGGTCGGATGATAGGTGGTGAAGTTACCATGTGGAGTCCTACAAGCTCTTCTGCTGTTATTGAGATGCTGTGCCACAAGGGGCCCATCTCGGCCATAGCTTTCCACCCTAGTAATCGTGATCTCATGGCCACATCTGGGAAAGAGAAAAAAGTTAAGCTTTGGGACATGAGGAATCTTAAGTGGCCACTCCAAACGTTACCAGGTCAGAGGCAGAGACTCTGGATTTCAGTCAAAAGGGTCTGCTCGCTCGTGGAACTGGGTCTTTTCTACAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

252

Amino Acids

28.88

Weight (kDa)

9.66

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	166 - 221	3.4e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	167 - 234	3.2e-06	WDR3 first beta-propeller domain
Beta-prop_THOC3	PF25174	168 - 235	3.9e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	159
AclI	AACGTT	1 cut(s)	674
AcoI	YGGCCR	3 cut(s)	570, 606, 662
AfiI	CCNNNNNNNGG	2 cut(s)	430, 615
AflII	CTTAAG	1 cut(s)	656
AgsI	TTSAA	3 cut(s)	31, 227, 416
AjnI	CCWGG	1 cut(s)	679
AluBI	AGCT	6 cut(s)	152, 395, 457, 525, 578, 637
AluI	AGCT	6 cut(s)	152, 395, 457, 525, 578, 637
Alw26I	GTCTC	3 cut(s)	280, 299, 688
AlwNI	CAGNNNCTG	1 cut(s)	756
AoxI	GGCC	5 cut(s)	142, 560, 570, 606, 662
ApaI	GGGCCC	1 cut(s)	564
ApeKI	GCWGC	3 cut(s)	317, 320, 392
AspS9I	GGNCC	3 cut(s)	142, 560, 561
AsuHPI	GGTGA	2 cut(s)	60, 509
BaeGI	GKGCMC	1 cut(s)	564
BalI	TGGCCA	2 cut(s)	608, 664
BanII	GRGCYC	1 cut(s)	564
BauI	CACGAG	1 cut(s)	728
BbvI	GCAGC	3 cut(s)	304, 332, 404
BccI	CCATC	6 cut(s)	118, 153, 201, 350, 473, 572
BciT130I	CCWGG	1 cut(s)	681
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	1 cut(s)	180
BcoDI	GTCTC	3 cut(s)	280, 299, 688
BfaI	CTAG	2 cut(s)	149, 588
BfmI	CTRYAG	2 cut(s)	318, 748
BfrI	CTTAAG	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	76
BisI	GCNGC	3 cut(s)	318, 321, 393
BlsI	GCNGC	3 cut(s)	319, 322, 394
Bme1390I	CCNGG	1 cut(s)	681
BmgT120I	GGNCC	3 cut(s)	142, 560, 561
BmiI	GGNNCC	2 cut(s)	561, 562
BmrFI	CCNGG	1 cut(s)	681
BmrI	ACTGGG	2 cut(s)	32, 746
BmsI	GCATC	2 cut(s)	443, 534
BmuI	ACTGGG	2 cut(s)	32, 746
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 615
Bse1I	ACTGG	2 cut(s)	27, 741
BseBI	CCWGG	1 cut(s)	681
BseGI	GGATG	3 cut(s)	361, 475, 492
BseLI	CCNNNNNNNGG	2 cut(s)	430, 615
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	2 cut(s)	27, 741
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	3 cut(s)	304, 332, 404
BsgI	GTGCAG	2 cut(s)	109, 411
BshFI	GGCC	5 cut(s)	144, 562, 572, 608, 664
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	2 cut(s)	430, 615
BsmAI	GTCTC	3 cut(s)	280, 299, 688
BsmBI	CGTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	656
BsnI	GGCC	5 cut(s)	144, 562, 572, 608, 664
Bsp120I	GGGCCC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp143I	GATC	3 cut(s)	76, 180, 598
BspANI	GGCC	5 cut(s)	144, 562, 572, 608, 664
BspCNI	CTCAG	1 cut(s)	288
BspLI	GGNNCC	2 cut(s)	561, 562
BspMAI	CTGCAG	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	27, 741
BssMI	GATC	3 cut(s)	76, 180, 598
BssSI	CACGAG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	728
Bst2UI	CCWGG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	1 cut(s)	532
BstAFI	CTTAAG	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	92, 725
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	361, 475, 492
BstKTI	GATC	3 cut(s)	79, 183, 601
BstMAI	GTCTC	3 cut(s)	280, 299, 688
BstMBI	GATC	3 cut(s)	76, 180, 598
BstNI	CCWGG	1 cut(s)	681
BstSCI	CCNGG	1 cut(s)	679
BstSFI	CTRYAG	2 cut(s)	318, 748
BstSLI	GKGCMC	1 cut(s)	564
BstV1I	GCAGC	3 cut(s)	304, 332, 404
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	5 cut(s)	144, 562, 572, 608, 664
BtsCI	GGATG	3 cut(s)	361, 475, 492
BtsI	GCAGTG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	200, 360, 370
Cac8I	GCNNGC	2 cut(s)	92, 725
CaiI	CAGNNNCTG	1 cut(s)	756
Cfr13I	GGNCC	3 cut(s)	142, 560, 561
CsiI	ACCWGGT	1 cut(s)	679
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	7 cut(s)	121, 163, 299, 386, 508, 604, 646
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	3 cut(s)	78, 182, 600
DpnII	GATC	3 cut(s)	76, 180, 598
EaeI	YGGCCR	3 cut(s)	570, 606, 662
Eam1104I	CTCTTC	1 cut(s)	532
EarI	CTCTTC	1 cut(s)	532
Eco24I	GRGCYC	1 cut(s)	564
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	564
Esp3I	CGTCTC	1 cut(s)	299
FaeI	CATG	7 cut(s)	124, 166, 302, 389, 511, 607, 649
FalI	AAGNNNNNCTT	2 cut(s)	621, 653
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	7 cut(s)	120, 162, 298, 385, 507, 603, 645
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	3 cut(s)	318, 321, 393
FokI	GGATG	3 cut(s)	368, 482, 499
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	318, 321, 393
FspBI	CTAG	2 cut(s)	149, 588
GluI	GCNGC	3 cut(s)	318, 321, 393
HaeIII	GGCC	5 cut(s)	144, 562, 572, 608, 664
Hin1II	CATG	7 cut(s)	124, 166, 302, 389, 511, 607, 649
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	4 cut(s)	63, 514, 652, 696
HphI	GGTGA	2 cut(s)	60, 509
Hpy166II	GTNNAC	2 cut(s)	134, 160
Hpy188I	TCNGA	3 cut(s)	486, 687, 758
Hpy188III	TCNNGA	6 cut(s)	60, 353, 413, 467, 596, 700
Hpy8I	GTNNAC	2 cut(s)	134, 160
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	308, 674
HpyCH4V	TGCA	5 cut(s)	90, 221, 298, 320, 392
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	2 cut(s)	308, 674
Hsp92II	CATG	7 cut(s)	124, 166, 302, 389, 511, 607, 649
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	76, 180, 598
LguI	GCTCTTC	1 cut(s)	532
Lsp1109I	GCAGC	3 cut(s)	304, 332, 404
LweI	GCATC	2 cut(s)	443, 534
MabI	ACCWGGT	1 cut(s)	679
MaeI	CTAG	2 cut(s)	149, 588
MaeII	ACGT	2 cut(s)	308, 674
MaeIII	GTNAC	3 cut(s)	472, 502, 675
MalI	GATC	3 cut(s)	78, 182, 600
MboI	GATC	3 cut(s)	76, 180, 598
MboII	GAAGA	3 cut(s)	86, 263, 519
MflI	RGATCY	1 cut(s)	76
MhlI	GDGCHC	1 cut(s)	564
MlsI	TGGCCA	2 cut(s)	608, 664
MluCI	AATT	3 cut(s)	188, 201, 258
MluNI	TGGCCA	2 cut(s)	608, 664
MlyI	GAGTC	2 cut(s)	523, 690
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	2 cut(s)	642, 681
Mox20I	TGGCCA	2 cut(s)	608, 664
MscI	TGGCCA	2 cut(s)	608, 664
MseI	TTAA	5 cut(s)	15, 377, 398, 633, 657
Msp20I	TGGCCA	2 cut(s)	608, 664
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	681
MvaI	CCWGG	1 cut(s)	681
NdeII	GATC	3 cut(s)	76, 180, 598
NlaIII	CATG	7 cut(s)	124, 166, 302, 389, 511, 607, 649
NlaIV	GGNNCC	2 cut(s)	561, 562
NmeAIII	GCCGAG	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	63, 652
PkrI	GCNGC	3 cut(s)	319, 322, 394
PleI	GAGTC	2 cut(s)	522, 690
PpsI	GAGTC	2 cut(s)	522, 690
PsiI	TTATAA	1 cut(s)	348
Psp1406I	AACGTT	1 cut(s)	674
Psp6I	CCWGG	1 cut(s)	679
PspGI	CCWGG	1 cut(s)	679
PspN4I	GGNNCC	2 cut(s)	561, 562
PspOMI	GGGCCC	1 cut(s)	560
PspPI	GGNCC	3 cut(s)	142, 560, 561
PstI	CTGCAG	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	756
PsuI	RGATCY	1 cut(s)	76
SapI	GCTCTTC	1 cut(s)	532
SaqAI	TTAA	5 cut(s)	15, 377, 398, 633, 657
SatI	GCNGC	3 cut(s)	318, 321, 393
Sau3AI	GATC	3 cut(s)	76, 180, 598
Sau96I	GGNCC	3 cut(s)	142, 560, 561
SchI	GAGTC	2 cut(s)	523, 690
ScrFI	CCNGG	1 cut(s)	681
SduI	GDGCHC	1 cut(s)	564
SexAI	ACCWGGT	1 cut(s)	679
SfaNI	GCATC	2 cut(s)	443, 534
SfcI	CTRYAG	2 cut(s)	318, 748
SmlI	CTYRAG	1 cut(s)	656
SmoI	CTYRAG	1 cut(s)	656
Sse9I	AATT	3 cut(s)	188, 201, 258
SspMI	CTAG	2 cut(s)	149, 588
StyD4I	CCNGG	1 cut(s)	679
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	2 cut(s)	311, 677
TaqI	TCGA	1 cut(s)	115
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	188, 201, 258
TfiI	GAWTC	2 cut(s)	63, 652
Tru1I	TTAA	5 cut(s)	15, 377, 398, 633, 657
Tru9I	TTAA	5 cut(s)	15, 377, 398, 633, 657
TscAI	CASTG	3 cut(s)	200, 367, 377
TseI	GCWGC	3 cut(s)	317, 320, 392
TspDTI	ATGAA	3 cut(s)	179, 449, 459
TspRI	CASTG	3 cut(s)	200, 367, 377
Vha464I	CTTAAG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	2 cut(s)	149, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.