Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

26500961 .. 26503305

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAGGATTCATATTCTGTTTGCAGCCCCAGAAGAATCCTGAGTGTGTCAAAGAAGAGGAGGGCAACTGTGTCATTTGTGGATCCAGATGATAAGGCTTCTGGGTTTCATGGCCCCAAGCCTTCTGAAGTCTATGGCTTTGTTGGTTCCATCACTACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCATATGTTCCTGAGTCTTGGCTGCATTCCATTGGGATCTTTTACTATCCCAGCAGGTATTGGGCATTGGCCGTGCCAGCTTACGCTATGATGACATTGGTATTAGCACTGGGATTTTACTGTGGCCTCAACTTCATGTCCACCCCTCCCCCTTCTTCCTTATATACTGTTTACGATGAATTCAGTAGGGATCCTTTGAGCTCTGCTCCAATTGGTGACGATGATCAGCCCATAGAACCCATATCCGATATCAGCATTGACAGAGTCAATCGTTCCATGTTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

159

Amino Acids

17.64

Weight (kDa)

5.26

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	42 - 157	1.4e-38	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AclWI	GGATC	5 cut(s)	77, 90, 233, 374, 387
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	147
AluBI	AGCT	2 cut(s)	269, 390
AluI	AGCT	2 cut(s)	269, 390
Alw21I	GWGCWC	1 cut(s)	392
AlwI	GGATC	5 cut(s)	77, 90, 233, 374, 387
AoxI	GGCC	3 cut(s)	112, 258, 313
ApeKI	GCWGC	2 cut(s)	24, 211
ApoI	RAATTY	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	416
BamHI	GGATCC	2 cut(s)	82, 379
BanII	GRGCYC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	36, 198
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	412
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	2 cut(s)	25, 212
BlsI	GCNGC	2 cut(s)	26, 213
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	84, 115, 148, 381
BmrI	ACTGGG	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	308
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
Bse1I	ACTGG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	32, 192
BseNI	ACTGG	1 cut(s)	303
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	36, 198
BseYI	CCCAGC	1 cut(s)	239
BshFI	GGCC	3 cut(s)	114, 260, 315
BsiHKAI	GWGCWC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	3 cut(s)	114, 260, 315
Bsp1286I	GDGCHC	1 cut(s)	392
Bsp143I	GATC	4 cut(s)	82, 225, 379, 412
BspANI	GGCC	3 cut(s)	114, 260, 315
BspCNI	CTCAG	2 cut(s)	33, 193
BspLI	GGNNCC	4 cut(s)	84, 115, 148, 381
BspMI	ACCTGC	1 cut(s)	234
BspPI	GGATC	5 cut(s)	77, 90, 233, 374, 387
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	4 cut(s)	82, 225, 379, 412
Bst4CI	ACNGT	5 cut(s)	70, 160, 172, 311, 358
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	41, 201
BstKTI	GATC	4 cut(s)	85, 228, 382, 415
BstMBI	GATC	4 cut(s)	82, 225, 379, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	36, 198
BstX2I	RGATCY	3 cut(s)	82, 225, 379
BstYI	RGATCY	3 cut(s)	82, 225, 379
BsuRI	GGCC	3 cut(s)	114, 260, 315
BtsIMutI	CAGTG	1 cut(s)	296
BveI	ACCTGC	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	113
CviAII	CATG	3 cut(s)	110, 325, 466
DdeI	CTNAG	2 cut(s)	41, 201
DpnI	GATC	4 cut(s)	84, 227, 381, 414
DpnII	GATC	4 cut(s)	82, 225, 379, 412
DraI	TTTAAA	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	390
Eco24I	GRGCYC	1 cut(s)	392
Eco32I	GATATC	1 cut(s)	439
Eco53kI	GAGCTC	1 cut(s)	390
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	368
EcoRV	GATATC	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	392
FaeI	CATG	3 cut(s)	113, 328, 469
FatI	CATG	3 cut(s)	109, 324, 465
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	25, 212
FriOI	GRGCYC	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	25, 212
GluI	GCNGC	2 cut(s)	25, 212
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	3 cut(s)	114, 260, 315
Hin1II	CATG	3 cut(s)	113, 328, 469
HinfI	GANTC	4 cut(s)	8, 36, 203, 453
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	2 cut(s)	330, 361
Hpy188I	TCNGA	2 cut(s)	127, 436
Hpy188III	TCNNGA	3 cut(s)	40, 86, 200
Hpy8I	GTNNAC	2 cut(s)	330, 361
HpyAV	CCTTC	2 cut(s)	132, 351
HpyCH4III	ACNGT	5 cut(s)	70, 160, 172, 311, 358
HpyCH4V	TGCA	2 cut(s)	24, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	41, 201
Hsp92II	CATG	3 cut(s)	113, 328, 469
Ksp22I	TGATCA	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	82, 225, 379, 412
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	9 cut(s)	43, 53, 87, 99, 213, 229, 253, 279, 284
Lsp1109I	GCAGC	2 cut(s)	36, 198
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	84, 227, 381, 414
MboI	GATC	4 cut(s)	82, 225, 379, 412
MboII	GAAGA	3 cut(s)	45, 67, 336
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	3 cut(s)	82, 225, 379
MhlI	GDGCHC	1 cut(s)	392
MluCI	AATT	2 cut(s)	368, 399
MlyI	GAGTC	2 cut(s)	212, 462
MnlI	CCTC	4 cut(s)	51, 54, 326, 345
MseI	TTAA	1 cut(s)	471
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	4 cut(s)	82, 225, 379, 412
NlaIII	CATG	3 cut(s)	113, 328, 469
NlaIV	GGNNCC	4 cut(s)	84, 115, 148, 381
NmuCI	GTSAC	1 cut(s)	404
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	8, 36
PflFI	GACNNNGTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	26, 213
PleI	GAGTC	2 cut(s)	211, 461
PpsI	GAGTC	2 cut(s)	211, 461
Psp124BI	GAGCTC	1 cut(s)	392
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	4 cut(s)	84, 115, 148, 381
PspPI	GGNCC	1 cut(s)	113
PsuI	RGATCY	3 cut(s)	82, 225, 379
PsyI	GACNNNGTC	1 cut(s)	452
SacI	GAGCTC	1 cut(s)	392
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	25, 212
Sau3AI	GATC	4 cut(s)	82, 225, 379, 412
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	2 cut(s)	212, 462
SduI	GDGCHC	1 cut(s)	392
SetI	ASST	3 cut(s)	248, 271, 392
SfcI	CTRYAG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	368, 399
SstI	GAGCTC	1 cut(s)	392
TaaI	ACNGT	5 cut(s)	70, 160, 172, 311, 358
TasI	AATT	2 cut(s)	368, 399
TfiI	GAWTC	2 cut(s)	8, 36
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	303
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	2 cut(s)	24, 211
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	98, 313, 381
TspRI	CASTG	1 cut(s)	303
Tth111I	GACNNNGTC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.