FvH4_7g08700

Phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004032
Physical Location & Seq
Reverse (-)
8516808 .. 8520147
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g08700.t1

Sequence Viewer

Length: 480 bp
ATGGAAGAGTCATACTCTGTTTGTAGTCCCAGAAGAATTCTGAGTGTGTCGAAGAAGAGGAGGGAGGCAACAGTGTCCTTTGCAGATCCTGATAGCAGGGCTTCTGGGTTTCATGGTCCCAAACCTGCTGAGGTTTATGGCTTTGTGGGTTCTATCACTACTGTTGTGGCTACAGTTATTCTGTTGGTGTGGGCATATGTCCCAGAGTCTTGGCTACATTGGATTGGAATCTTTTACTACCCCAGCAGGTATTGGGCATTGGCTGTGCCAGCTTATGCAATGATGACAGTGGTACTGGCATTAGTATTTTACTGTGGTCTCAACTTTATGTCCACCCCTCCCCCATCCTCCTTATATACAATATATGATGAGTTTAGTAAGGATCCTGCAAGTTCTGGTCAAACGACCAGTGATGATCAACCCATTGAACCCATATCTGATATCAGTATTGACATAATCAATCATGCCATGTTTAAATAG

Protein Analysis

160

Amino Acids

17.73

Weight (kDa)

5.24

Isoelectric Point (pI)

53.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIG-P PF08510 43 - 158 9.6e-39 PIG-P
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 133, 237
AclWI GGATC 3 cut(s) 80, 377, 390
AcsI RAATTY 1 cut(s) 36
AfaI GTAC 1 cut(s) 294
AgsI TTSAA 1 cut(s) 428
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Alw26I GTCTC 1 cut(s) 323
AlwI GGATC 3 cut(s) 80, 377, 390
AlwNI CAGNNNCTG 1 cut(s) 89
ApoI RAATTY 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BamHI GGATCC 1 cut(s) 382
BbvCI CCTCAGC 1 cut(s) 129
BccI CCATC 1 cut(s) 352
BclI TGATCA 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 171
BfuAI ACCTGC 2 cut(s) 133, 237
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 118, 384
BplI GAGNNNNNCTC 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 323
Bse1I ACTGG 2 cut(s) 300, 408
Bse3DI GCAATG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 227
BseGI GGATG 1 cut(s) 344
BseJI GATNNNNATC 1 cut(s) 227
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 32, 120
BseNI ACTGG 2 cut(s) 300, 408
BseRI GAGGAG 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 242
BslFI GGGAC 3 cut(s) 12, 102, 185
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 3 cut(s) 12, 102, 185
Bso31I GGTCTC 1 cut(s) 323
Bsp143I GATC 3 cut(s) 85, 382, 415
BspCNI CTCAG 2 cut(s) 33, 121
BspLI GGNNCC 2 cut(s) 118, 384
BspMI ACCTGC 2 cut(s) 133, 237
BspPI GGATC 3 cut(s) 80, 377, 390
BspTNI GGTCTC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 2 cut(s) 300, 408
BssMI GATC 3 cut(s) 85, 382, 415
Bst4CI ACNGT 5 cut(s) 73, 163, 175, 289, 314
Bst6I CTCTTC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 41, 129
BstF5I GGATG 1 cut(s) 344
BstKTI GATC 3 cut(s) 88, 385, 418
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 3 cut(s) 85, 382, 415
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 171
BstX2I RGATCY 2 cut(s) 85, 382
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 2 cut(s) 85, 382
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 3 cut(s) 78, 294, 415
BveI ACCTGC 2 cut(s) 133, 237
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 293
CviAII CATG 3 cut(s) 113, 464, 469
CviJI RGCY 6 cut(s) 101, 141, 170, 214, 263, 272
CviKI_1 RGCY 6 cut(s) 101, 141, 170, 214, 263, 272
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 2 cut(s) 41, 129
DpnI GATC 3 cut(s) 87, 384, 417
DpnII GATC 3 cut(s) 85, 382, 415
DraI TTTAAA 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 323
Eco32I GATATC 1 cut(s) 442
Eco47I GGWCC 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 36
EcoRV GATATC 1 cut(s) 442
FaeI CATG 3 cut(s) 116, 467, 472
FaqI GGGAC 3 cut(s) 12, 102, 185
FatI CATG 3 cut(s) 112, 463, 468
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 415
FokI GGATG 1 cut(s) 331
GsaI CCCAGC 1 cut(s) 246
Hin1II CATG 3 cut(s) 116, 467, 472
HinfI GANTC 3 cut(s) 8, 206, 228
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 2 cut(s) 42, 439
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 333
HpyCH4III ACNGT 5 cut(s) 73, 163, 175, 289, 314
HpyCH4V TGCA 3 cut(s) 83, 278, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 41, 129
Hsp92II CATG 3 cut(s) 116, 467, 472
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 3 cut(s) 85, 382, 415
MalI GATC 3 cut(s) 87, 384, 417
MboI GATC 3 cut(s) 85, 382, 415
MboII GAAGA 4 cut(s) 17, 45, 64, 67
MflI RGATCY 2 cut(s) 85, 382
MluCI AATT 1 cut(s) 36
MlyI GAGTC 2 cut(s) 17, 215
MnlI CCTC 6 cut(s) 51, 54, 58, 124, 348, 358
MseI TTAA 1 cut(s) 474
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeI CATATG 1 cut(s) 196
NdeII GATC 3 cut(s) 85, 382, 415
NlaIII CATG 3 cut(s) 116, 467, 472
NlaIV GGNNCC 2 cut(s) 118, 384
PfeI GAWTC 1 cut(s) 228
PleI GAGTC 2 cut(s) 16, 214
PpsI GAGTC 2 cut(s) 16, 214
PspFI CCCAGC 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 118, 384
PspPI GGNCC 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 2 cut(s) 85, 382
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 474
Sau3AI GATC 3 cut(s) 85, 382, 415
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 2 cut(s) 17, 215
SetI ASST 4 cut(s) 127, 135, 251, 274
SfcI CTRYAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 116
Sse9I AATT 1 cut(s) 36
TaaI ACNGT 5 cut(s) 73, 163, 175, 289, 314
TaqI TCGA 1 cut(s) 50
TasI AATT 1 cut(s) 36
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 78, 294, 415
TspDTI ATGAA 1 cut(s) 101
TspRI CASTG 3 cut(s) 78, 294, 415
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.