Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016880.1

Orthogroup ID

OG0004032

Physical Location & Seq

Genomic Coordinates Forward (+)

2165 .. 4220

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016880.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgagtgtgtcaaagaagaggagggcggcaacagtgtcttttgcagatccagatgttaaggcttctggttttcatggtcccaaacctgctgaagtttatggctttgtaggttccatcacaactgttgtggctacagttatattcttggtgtgggcatatgttccagagtcttggctacattcaattggaatcttttactaccccagcaggtactgggcattggcagtgccagcttatgcaatgatgactgttgtattagcattagtattttactgtggcctcaacttcatgtccacccctcccccatcttccttatatacggtatatgatgaatttagtagagatcctgtaagctctgctcgaattgccaatgatgatcaacccattgaacccatatctgatatcagtattgacagaatcaatcgttccatgtttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

146

Amino Acids

16.25

Weight (kDa)

6.71

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004032)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61280 AT1G61280 AT2G39445 AT2G39445 AT2G39445
fragaria_vesca	FvH4_5g29260 FvH4_7g08700
malus_domestica	MD02G1225800.v1.1 MD07G1088000.v1.1
prunus_persica	Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1 Prupe.2G114700_v2.0.a1
pyrus_communis	pycom02g19450
rosa_chinensis	RchiOBHm_Chr1g0343921 RchiOBHm_Chr5g0055501
rosa_laevigata	RLG00000028948 RLG00000034992
rosa_multiflora	Rmu_sc0001673.1_g000037 Rmu_sc0007032.1_g000003 Rmu_sc0007696.1_g000023 Rmu_sc0016880.1_g000001 Rmu_ssc0000434.1_g000070
rosa_roxburghii	Rroxscaffold_4G00310290
rosa_rugosa	Rorug01G0169400 Rorug05G0293300
rosa_samantha	Rh1AG185900 Rh1BG125300 Rh1DG184700 Rh5AG362900 Rh6BG211800
rosa_wichuraiana	Rw1G015330 Rw1G015370 Rw5G034160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	94, 198
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	2 cut(s)	41, 338
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	183, 389
AluBI	AGCT	2 cut(s)	233, 354
AluI	AGCT	2 cut(s)	233, 354
AlwI	GGATC	2 cut(s)	41, 338
AlwNI	CAGNNNCTG	1 cut(s)	213
AoxI	GGCC	1 cut(s)	277
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	77
AvaII	GGWCC	1 cut(s)	77
BccI	CCATC	2 cut(s)	122, 313
BclI	TGATCA	1 cut(s)	376
BfmI	CTRYAG	1 cut(s)	132
BfuAI	ACCTGC	2 cut(s)	94, 198
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	79, 112
BmrI	ACTGGG	1 cut(s)	223
BmuI	ACTGGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	46, 343, 376
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	79, 112
BspMI	ACCTGC	2 cut(s)	94, 198
BspPI	GGATC	2 cut(s)	41, 338
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	218
BssMI	GATC	3 cut(s)	46, 343, 376
Bst4CI	ACNGT	6 cut(s)	34, 124, 136, 250, 275, 322
Bst6I	CTCTTC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	49, 346, 379
BstMBI	GATC	3 cut(s)	46, 343, 376
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 365
BstSFI	CTRYAG	1 cut(s)	132
BstX2I	RGATCY	2 cut(s)	46, 343
BstXI	CCANNNNNNTGG	1 cut(s)	171
BstYI	RGATCY	2 cut(s)	46, 343
BsuRI	GGCC	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	39, 231
BveI	ACCTGC	2 cut(s)	94, 198
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	213
Cfr13I	GGNCC	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	211
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	3 cut(s)	74, 289, 430
CviJI	RGCY	7 cut(s)	62, 102, 131, 175, 233, 279, 354
CviKI_1	RGCY	7 cut(s)	62, 102, 131, 175, 233, 279, 354
CviQI	GTAC	1 cut(s)	211
DpnI	GATC	3 cut(s)	48, 345, 378
DpnII	GATC	3 cut(s)	46, 343, 376
DraI	TTTAAA	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	403
FaeI	CATG	3 cut(s)	77, 292, 433
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	73, 288, 429
FauNDI	CATATG	1 cut(s)	157
FbaI	TGATCA	1 cut(s)	376
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	77, 292, 433
HinfI	GANTC	3 cut(s)	167, 189, 417
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	2 cut(s)	50, 164
Hpy8I	GTNNAC	1 cut(s)	294
HpyCH4III	ACNGT	6 cut(s)	34, 124, 136, 250, 275, 322
HpyCH4V	TGCA	2 cut(s)	44, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 365
Hsp92II	CATG	3 cut(s)	77, 292, 433
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	46, 343, 376
LpnPI	CCDG	9 cut(s)	51, 63, 99, 177, 193, 199, 217, 243, 360
MalI	GATC	3 cut(s)	48, 345, 378
MboI	GATC	3 cut(s)	46, 343, 376
MboII	GAAGA	2 cut(s)	28, 300
MfeI	CAATTG	1 cut(s)	183
MflI	RGATCY	2 cut(s)	46, 343
MluCI	AATT	3 cut(s)	183, 332, 363
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	12, 15, 290, 309
MseI	TTAA	2 cut(s)	57, 435
MunI	CAATTG	1 cut(s)	183
MwoI	GCNNNNNNNGC	2 cut(s)	230, 365
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	46, 343, 376
NlaIII	CATG	3 cut(s)	77, 292, 433
NlaIV	GGNNCC	2 cut(s)	79, 112
PfeI	GAWTC	2 cut(s)	189, 417
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	203
PspN4I	GGNNCC	2 cut(s)	79, 112
PspPI	GGNCC	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	46, 343
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	2 cut(s)	57, 435
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	46, 343, 376
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	176
SetI	ASST	5 cut(s)	88, 112, 212, 235, 356
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	3 cut(s)	183, 332, 363
SsiI	CCGC	1 cut(s)	26
TaaI	ACNGT	6 cut(s)	34, 124, 136, 250, 275, 322
TaqI	TCGA	1 cut(s)	361
TasI	AATT	3 cut(s)	183, 332, 363
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	189, 417
Tru1I	TTAA	2 cut(s)	57, 435
Tru9I	TTAA	2 cut(s)	57, 435
TscAI	CASTG	2 cut(s)	39, 231
TspDTI	ATGAA	3 cut(s)	62, 277, 345
TspRI	CASTG	2 cut(s)	39, 231
VpaK11BI	GGWCC	1 cut(s)	77
XapI	RAATTY	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.